FC931385

Overview
NameFC931385
Unique NameFC931385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.468e-26
Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD---APMFVVGVNEKEYKPE 486
            +KIGINGFGRIGRLVAR+ +    V LV +ND  +    + Y+FKYDS HG +      V  E+ ++  ++ +  F  RNP ++PW   GA+YVVESTG+FT               V+ISAPSKD    P FVVGVN   Y  +
Sbjct:    2 LKIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHGSY--GGTVVAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVESTGLFTTYATAENHLKAGAKRVIISAPSKDPEKIPTFVVGVNHLNYNAD 143          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPE 486
            IKIGINGFGRIGR+V R  +    D+E+VA+ND  +  DY+ YM KYDSVHG++   E+ V D  TL+   K + +   ++P E+ W + GA+ VVESTG+F                V++SAPSK D PMFV GVN   YK E
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKDIEVVAIND-LLEPDYLAYMLKYDSVHGRF-DGEVSV-DGNTLVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIFLTKEGAQKHIDAGAKKVIMSAPSKDDTPMFVYGVNHGTYKGE 143          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.054e-25
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  133 VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            V+++AV+DPFI   YM YMFKYDSVHG++K   +++KD K ++ G  P+ VF  R+P  I W   GA+YVVES+GVFT               V+ISAPS DAPMFVVGVN   Y
Sbjct:    6 VKVLAVSDPFIDLQYMVYMFKYDSVHGRFK-GTVEIKDGKLVIDGH-PITVFQERDPANIQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPSADAPMFVVGVNLDAY 118          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24
Identity = 59/141 (41.84%), Postives = 89/141 (63.12%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVV-GVNEKEYK 480
            +  GINGFGRIGRLVAR++++  + +L+ VN    + DYM Y FKYDS+HG+++  ++ V  +  ++ G++ +     R+P++I WAKTG EY+ ESTGVF                V+ SAP+KD  + VV GVN ++YK
Sbjct:   49 VPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQ-GDVVVDGDDLVIDGQRVITTRA-RDPKDIGWAKTGVEYLCESTGVFLTAEKAQPHIDAGVKKVIFSAPAKDDSLTVVMGVNAEDYK 187          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVV----LQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP 483
            IK+GINGFGRIGR+V + +    L  +++++VAV D      Y  Y  KYDSVHG++KH+    K       D+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT               VVISAP S  A  FV+GVN   Y P
Sbjct:    3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNP 155          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD---APMFVVGVNEKEYKP 483
            K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ + ++++ KD+  ++ G   +     RNP E+PW K GA+YVVESTG+FT               V+ISAP+KD       +VGVN   + P
Sbjct:    3 KLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGKLR-SQVEAKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGAKRVIISAPTKDPDRVRTLLVGVNHDLFDP 144          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD---APMFVVGVNEKEYKP 483
            K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ + ++++ KD+  ++ G   +     RNP E+PW K GA+YVVESTG+FT               V+ISAP+KD       +VGVN   + P
Sbjct:    3 KLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLR-SQVETKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDP 144          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24
Identity = 60/143 (41.96%), Postives = 90/143 (62.94%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPE 486
            IKIGINGFGRIGR++ R+  +R+++E+VA+ND  +   Y+ YM KYDS HG +K  +++VK+   ++ G+K + +   ++PE++ W K   + V+ESTG+F                VVI+ PSK D PMFV G N  +YK E
Sbjct:    3 IKIGINGFGRIGRVLFRLAQERENIEVVAIND-LLDPKYIAYMLKYDSTHGNFK-KDIEVKNNNLIINGKK-IRITSIKDPEKLMWDKLLIDVVIESTGLFLTKDTAYKHILSGAKKVVITGPSKDDIPMFVRGANFDKYKGE 142          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEY 477
            IK+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV++ PSKD  PMFV G N  +Y
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDA-PMFVVGVNEKEY 477
            IKIGINGFGRIGR+V R    RDD+E+V +ND  I  +YM YM KYDS HG++    ++VKD   ++ G K + V   R+P  + W   G +  VE+TG+F                VV++ PSKDA PMFV GVN   Y
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHGRF-DGTVEVKDGNLVVNG-KTIRVTAERDPANLNWGAIGVDIAVEATGLFLTDETARKHITAGAKKVVLTGPSKDATPMFVRGVNFNAY 139          
The following BLAST results are available for this feature:
BLAST of FC931385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
G3P1_SYNY31.468e-2644.14Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_RALSO2.504e-2646.53Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_LACDT8.054e-2551.30Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_GUITH1.374e-2441.84Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PG_TRYBB1.794e-2441.83Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P1_ANAVT1.794e-2441.38Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP1.794e-2441.38Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_BUCAP2.343e-2441.96Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P1_ESCF32.343e-2442.86Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_HAEIN3.060e-2445.00Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]

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Properties
Property NameValue
Genbank descriptionC34104E10EF PostHarvP1 Citrus clementina cDNA clone C34104E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931385 ID=FC931385; Name=FC931385; organism=Citrus clementina; type=EST; length=488bp
CGTTAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATGGCCGG
AGACAAGAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGCCGTT
TGGTTGCGAGAGTCGTACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTC
AACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGA
TAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGA
AGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAAC
CCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATC
AACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTG
GTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTT
GTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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