FC931385

Overview
NameFC931385
Unique NameFC931385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.624e-17
Identity = 46/144 (31.94%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPE 486
            K+++GINGFGR+GRL  R      ++E V +N+         ++ K+DSVHG+W   E++ + E+ L+ G  P++   +  P+++PW   G + V+E +G F                V+++AP K+  +  V+GVN+  Y+PE
Sbjct:    2 KVRVGINGFGRMGRLALRAAWDWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWT-PEVEAEGERVLIDG-TPLSFSEYGKPDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPE 143          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.732e-17
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  100 LVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEY 477
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G+  + V   ++P  + W + G + V E+TG+F                VV++ PSK D PMFV+GVN K Y
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGSVEVKDGHLVVNGQ-TIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHIAAGAKKVVLTGPSKDDTPMFVMGVNLKSY 124          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKP 483
            +K+GINGFGRIGR V R++  R  VE+  +ND       + ++ KYDS++ ++        D++ L    K +     ++P+EIPWA+ G   V+ESTGVFT               V+I+AP+K   +  V+GVN + Y P
Sbjct:    1 MKVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPGEV--AYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDP 138          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVV-GVNEKEYKPE 486
            ++IGINGFGRIGR V R    R  ++E+VAVND       M ++  YDS+ G++   E    +   +  G++ + V   R+P  +PW   G + V+ESTG+FT               V+I+AP+      VV GVN+ +Y PE
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARSSELEIVAVND-LGDVPTMAHLLAYDSILGRFP--EEVTAEPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHVDGGAKKVIIAAPASGEDFTVVLGVNDGDYDPE 143          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  100 LVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYK 480
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV++ PSKD  PMFV G N  +Y+
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 125          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 47/144 (32.64%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPE 486
            KI++GINGFGR+GRL  R      ++E V +N+         ++ K+DSVHG+W   E++ + E+ L+    P++   +  PE++PW   G + V+E +G F                V+++AP K+  +  V+GVN+  Y+PE
Sbjct:    2 KIRVGINGFGRMGRLALRAAWGWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWT-PEVEAEGERVLI-DSTPLSFSEYGKPEDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPE 143          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 54/141 (38.30%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVV-GVNEK 471
            I++ INGFGRIGR V R +     R+ +++VA+ND         ++F+YDSVHG +   E++   E   + G++ +AV   RNP E+PW   G + V+E TG+FT               V+ISAP KD    VV GVN +
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAIND-LGDAAVNAHLFQYDSVHGHFP-GEVEHDAESLRVMGDR-IAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVEATVVYGVNHE 140          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  100 LVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEY 477
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV++ PSKD  PMFV G N  +Y
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 124          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 1
Query:   52 DKKIKIGINGFGRIGRLVARVVLQRDD---VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPE 486
            + K+K+ INGFGRIGR   R    R D   ++++A+ND        +++ KYDS  G +  +   V D    + G K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +VVGVN  +Y P+
Sbjct:   65 EAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGDNAISVDG-KVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYNPD 211          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  100 LVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDA-PMFVVGVNEKEY 477
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W + G E V E+TG+F                VV++ PSKD+ PMFV G N   Y
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWNEAGVEVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDSTPMFVRGANFDTY 124          
The following BLAST results are available for this feature:
BLAST of FC931385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
G3P3_ANASP3.624e-1731.94Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P_SEROD4.732e-1737.01Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_THEAQ6.181e-1735.92Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P_STRAE6.181e-1736.11Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_CITFR6.181e-1737.50Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P3_ANAVT6.181e-1732.64Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P_PSEAE8.072e-1738.30Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P1_ESCFE1.054e-1637.80Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3PA_MAIZE1.377e-1635.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_ESCBL2.349e-1637.80Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC34104E10EF PostHarvP1 Citrus clementina cDNA clone C34104E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931385 ID=FC931385; Name=FC931385; organism=Citrus clementina; type=EST; length=488bp
CGTTAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATGGCCGG
AGACAAGAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGCCGTT
TGGTTGCGAGAGTCGTACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTC
AACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGA
TAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGA
AGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAAC
CCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATC
AACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTG
GTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTT
GTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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