FC931385

Overview
NameFC931385
Unique NameFC931385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.240e-33
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+GINGFGRIGR+V R  L   +V +VAVNDPFI+ +YM YMFKYDSVHG++K   ++ K  K ++ G K ++VFG ++   IPW+  GAEY+VESTGVFT               V+ISAPS DAPM+V GVN   Y
Sbjct:    3 VKVGINGFGRIGRIVLRNALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHGRFK-GTVETKGGKLIVDG-KEISVFGEKDAGAIPWSSVGAEYIVESTGVFTTIEKASAHLKGGAKKVIISAPSADAPMYVCGVNLDSY 139          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.240e-33
Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            +++GINGFGRIGR+V R      DV++VA+NDPFI  DYM YM KYD+VHG++    ++ KD K ++ G   +AV   R+P  IPW   GA+YVVESTGVFT               V+ISAPS DAPMFV GVN + YK E
Sbjct:    3 VQVGINGFGRIGRIVLRATESNKDVQVVAINDPFIPLDYMVYMLKYDTVHGRF-DGSVEAKDGKLVVNGH-AIAVSAERDPTSIPWGSAGADYVVESTGVFTTTEAASAHLKGGAKKVIISAPSADAPMFVCGVNLEAYKSE 142          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.619e-33
Identity = 73/139 (52.52%), Postives = 93/139 (66.91%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV+     + G K +  +  ++P  IPW++TGA YVVESTGVFT               VVISAPS DAPMFV+GVN + Y
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFK-GDIKVEGNDLTING-KTIRFYTEKDPANIPWSETGAYYVVESTGVFTTTDKAKAHLKGGAKKVVISAPSADAPMFVMGVNNETY 139          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.619e-33
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+GINGFGRIGRLV R       VE+VA+NDPFI  DYM YMF+YDS HG++K  E+K +  K ++ G   + V+  R+P  I W   GA YVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYK-GEVKAEGGKLVIDGH-AITVYSERDPANIKWGDAGATYVVESTGVFTTIEKASAHIKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.619e-33
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+G+NGFGRIGRLV R       VE+VA+NDPFI  +YM YMF+YDS HG++K   +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN+ +Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFTSGKVEVVAINDPFIDLNYMVYMFQYDSTHGKFK-GTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNQDKY 138          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.619e-33
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   + +F  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVINGH-AITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.114e-33
Identity = 70/139 (50.36%), Postives = 91/139 (65.47%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.762e-33
Identity = 73/140 (52.14%), Postives = 91/140 (65.00%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYK 480
            +K+GINGFG IGRLV R       V++VA+NDPFI  DYM YMFKYDS HG++K   +K ++ K L+  ++ + VF  R+P  I W   GA YVVESTGVFT               VVISAPS DAPMFVVGVN ++Y+
Sbjct:    2 VKVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFK-GTVKAENGK-LIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVFTTTEKASLHLKGGAKRVVISAPSADAPMFVVGVNHEKYE 139          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 2.762e-33
Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            K+GINGFGRIGR+V R  ++ + V++VAVNDPFI   Y  YM KYDS HG++  N     D  TL+   K +  +  R+P +IPW++TGAEYVVESTGVFT               V+ISAPS D+PMFV+GVN  +Y
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRF--NGTVEFDGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQEKASLHLKGGAKKVIISAPSSDSPMFVMGVNNDQY 140          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.762e-33
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+GINGFGRIGR+V R   +  DVE+VAVNDPFI   Y  YM KYDS HG +K +     +   L+ G K V  +  R+P  IPW++TGA+Y+VESTGVFT               V+ISAPS DAPM+V+GVNEK Y
Sbjct:    3 VKVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDV--TVEGSDLVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMYVMGVNEKTY 139          
The following BLAST results are available for this feature:
BLAST of FC931385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
G3P_LENED1.240e-3352.52Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P1_RHIRA1.240e-3351.41Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_PHANO1.619e-3352.52Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_DANRE1.619e-3351.80Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_CRIGR1.619e-3351.08Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CHICK1.619e-3351.08Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_RABIT2.114e-3350.36Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_XENLA2.762e-3352.14Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_MONAN2.762e-3350.72Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_CRYPA2.762e-3351.80Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]

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Properties
Property NameValue
Genbank descriptionC34104E10EF PostHarvP1 Citrus clementina cDNA clone C34104E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931385 ID=FC931385; Name=FC931385; organism=Citrus clementina; type=EST; length=488bp
CGTTAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATGGCCGG
AGACAAGAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGCCGTT
TGGTTGCGAGAGTCGTACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTC
AACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGA
TAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGA
AGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAAC
CCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATC
AACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTG
GTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTT
GTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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