FC931385

Overview
NameFC931385
Unique NameFC931385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15341 contig Ccv1_Contig15341:32..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.711e-33
Identity = 72/138 (52.17%), Postives = 90/138 (65.22%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            K+GINGFGRIGR+V R  +   +V++VAVNDPFI T Y  YM KYDS HGQ+K   ++  +E  ++ G+K +  F  R+P  IPW  TGA+Y+VESTGVFT               VVISAPS DAPMFV+GVN   Y
Sbjct:    4 KVGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFK-GTIETYEEGLIVNGKK-IRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSY 139          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.152e-33
Identity = 66/142 (46.48%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            + + +NGFGRIGRLV R+ + R D+ LVA+NDPFISTDY  YMFKYDS HG++       KD   ++   K VAVF  ++P  +PW K G +  ++STG+F                VVI+APS  APM+V+GVNE+ Y P+
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHGRFDGEVSHDKDH--IILNGKKVAVFNEKDPAALPWGKLGVDVAIDSTGIFKEMDSANKHIEAGAKKVVITAPSGSAPMYVMGVNEETYTPD 141          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.152e-33
Identity = 71/142 (50.00%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 483
            KIKIGINGFGRIGRLV R  + R D+E+VA+NDPFI  +YM YMFKYDSVH  W  +    KD    L   + +  F   +P +I W   GA+ V+ESTGVFT               V+I+APS DAPM+V+GVN ++Y P
Sbjct:    4 KIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKD--GFLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVIITAPSNDAPMYVMGVNHEKYNP 143          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 69/139 (49.64%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K + +F  R+P  I W   GA YVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 73/141 (51.77%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            K+GINGFGRIGR+V R  ++   V++VAVNDPFI T Y  YM KYDS HGQ+K   ++  DE  ++ G+K +     R+P  IPW + GAEY+VESTGVFT               VVISAPS DAPMFV+GVN + YK +
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFK-GTIETYDEGLIVNGKK-IRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPSADAPMFVMGVNNETYKKD 142          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   55 KKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 483
            +++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K N    K +  L+     ++VF  + P+EIPW   G+ +VVE+TGV+                VVI APS DAPMFV+GVNEKEY P
Sbjct:   61 RELIVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKGQ--LVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPSPDAPMFVMGVNEKEYNP 200          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 71/140 (50.71%), Postives = 93/140 (66.43%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 483
            K+GINGFGRIGR+V R  +    +++VAVNDPFI  DYM YMFKYDS HG+++   ++ K  K ++ G   + V   R+P  I W+ +GAEYV+ESTGVFT               V+ISAPSKDAPMFVVGVN +++ P
Sbjct:    5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFE-GSVETKGGKLVIDGHS-IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNP 142          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 73/138 (52.90%), Postives = 91/138 (65.94%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            K+GINGFGRIGR+V R  L+   VE+VA+NDPFI   Y  YMFKYDS HG++K  ++KV D K L+   K +  +  R+P  IPW  +GAEY+VESTGVFT               V+ISAPS DAPM+V+GVNE  Y
Sbjct:    4 KVGINGFGRIGRVVLRNALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFK-GDIKV-DGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVIISAPSADAPMYVMGVNEDTY 139          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.049e-32
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            IK+GINGFGRIGR++    L++ ++ +VAVNDPFI   Y  YM KYDS HG +K  +++V D + L+   KP+  +  R+P  I W++TGAEY+VESTGVFT               V+ISAPS DAPMFV+GVN K+Y
Sbjct:    3 IKVGINGFGRIGRILLSNALEKPELSVVAVNDPFIEPTYAAYMLKYDSSHGLFK-GDIEV-DGQNLVVNGKPIRFYSERDPANIKWSETGAEYIVESTGVFTTIDKAKAHLNGGAKKVIISAPSADAPMFVMGVNHKDY 139          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.049e-32
Identity = 76/141 (53.90%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            KIGINGFGRIGRLV R  L +   E+VAVNDPFI  +YM Y+FKYDS HG++K       D   L+   K + VF  R+P  I WA  GAEY+VESTGVFT               VVISAPS DAPMFV GVN + Y P+
Sbjct:    3 KIGINGFGRIGRLVLRAALDKG-AEVVAVNDPFIDVNYMVYLFKYDSTHGRFKGTV--AADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTIDKASAHFKGGAKKVVISAPSADAPMFVCGVNLEAYSPD 140          
The following BLAST results are available for this feature:
BLAST of FC931385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
G3P_ASPNG4.711e-3352.17Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_ZYGRO6.152e-3346.48Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3PC_CHLRE6.152e-3350.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PIG8.035e-3349.64Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_EMENI8.035e-3351.77Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3PT_BOVIN8.035e-3349.65Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_SCHPO8.035e-3350.71Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P1_TRIKO8.035e-3352.90Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_TRIAT1.049e-3250.36Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_GLOMM1.049e-3253.90Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]

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Properties
Property NameValue
Genbank descriptionC34104E10EF PostHarvP1 Citrus clementina cDNA clone C34104E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931385 ID=FC931385; Name=FC931385; organism=Citrus clementina; type=EST; length=488bp
CGTTAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATGGCCGG
AGACAAGAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGCCGTT
TGGTTGCGAGAGTCGTACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTC
AACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGA
TAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGA
AGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAAC
CCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATC
AACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTG
GTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTT
GTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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