FC931387

Overview
NameFC931387
Unique NameFC931387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931387_ssr218 microsatellite FC931387_ssr218:218..232. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_SALTO (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=purC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  373 GKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIA------KKCSVIPVEFVVRGFVTG 630
            GKVRD+Y  GD L+LV +DR S +D +L + IP KG++L   SLWWFDQ   + PN V+S+ D  V +A      ++  ++PVE V RG++ G
Sbjct:    7 GKVRDVYADGDDLILVASDRVSVYDVVLPTPIPEKGKLLTALSLWWFDQLAELVPNHVLSATDVPVELAGRAIRCRRLEMVPVECVARGYLVG 99          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_GEOLS (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=purC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  349 PGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISS----------PDKNV-----TIAKKCSVIPVEFVVRGFVTGS 633
            PGLK   RGKVRDIYD GD L++VT+DR SAFD I+   IP KG+VL + S +WF Q   I PN +IS+          P   V      + KK   +  E +VRG+V+GS
Sbjct:   11 PGLKLVNRGKVRDIYDLGDALLMVTSDRISAFDVIMNEPIPDKGKVLTQISKFWFSQMEDIIPNHIISTDVADYPAACQPYAEVLAGRSMLVKKAEPLAAECIVRGYVSGS 121          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_GEOSF (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter sp. (strain FRC-32) GN=purC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  319 LSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV---------------TIAKKCSVIPVEFVVRGFVTGS 633
            +S+  L    P LK   RGKVRDIYD G+ L++VTTDR SAFD I+   IP KG VL + S +WF Q   I  N +IS+  K+                 + KK   +P E +VRG+++GS
Sbjct:    1 MSKLVLTTDFPDLKLAARGKVRDIYDLGETLLIVTTDRISAFDVIMNEGIPDKGYVLTQISAFWFRQMEDIIKNHIISTEVKDFPSACQKYADILEGRSMLVKKAKPLPAECIVRGYISGS 121          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_ELUMP (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Elusimicrobium minutum (strain Pei191) GN=purC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 52/134 (38.81%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  331 NLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTI-----------------AKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEI 678
            N  + +P LK   +GKVRD+YD G  L++V +DR S FD +L S IP KG++L + S +WF +T  I PN +ISS    + I                  KKC  I  E VVRG++TGS     W  Y K+  +
Sbjct:    3 NSQINLPLLK---KGKVRDVYDAGKMLLIVASDRVSVFDCVLPSQIPDKGKILTQISNFWFAKTISIVPNHMISSDINEINIILKLGLDPQYYSGRTVLVKKCERIDFECVVRGYITGSA----WKEYQKSGTV 129          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_XANAC (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Xanthomonas axonopodis pv. citri GN=purC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  319 LSETNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEI 678
            +S T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN ++        P+        K   + +K   +PVE + RG+V GS     W  Y +  +I
Sbjct:    3 VSTTLLQSDLPGLPLRHRGKVRDVFDIPRDRLPADAPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFHKTEHLMPNHLVDIRVEQVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYVIGSG----WKDYQRTGKI 144          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_XANC5 (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=purC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  319 LSETNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEI 678
            +S T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN ++        P+        K   + +K   +PVE + RG+V GS     W  Y +  +I
Sbjct:    1 MSTTLLQSDLPGLPLRHRGKVRDVFDLPRDRLPADAPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFHKTEHLMPNHLMDIRVEQVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYVIGSG----WKDYQRTGKI 142          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_STRCO (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Streptomyces coelicolor GN=purC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  340 LTVPGLKSKTRGKVRDIY--DGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSP---------DKNVTIAKKCSVIPVEFVVRGFVTGS 633
            + VPGL     GKVR++Y  + GD LV+V +DR SA+D +L + IP KG+VL + SLWWFDQ   + PN V+S+          +    + K   ++PVE V RG++TGS
Sbjct:   11 IQVPGLVHLHTGKVRELYRNEAGD-LVMVASDRISAYDWVLPTEIPDKGRVLTQLSLWWFDQLADLAPNHVLSTELPPGAPADWEGRALVCKSLRMVPVECVARGYLTGS 119          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_XANOP (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=purC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  319 LSETNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEI 678
            +S T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN ++        P+        K   + +K   +PVE + RG++ GS     W  Y +  +I
Sbjct:    1 MSTTLLQSDLPGLPLRHRGKVRDVFDIPRDRLPADAPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFHKTEHLMPNHLVDIRVEQVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSG----WKDYQRTGKI 142          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_GEOBB (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=purC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 54/131 (41.22%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  334 LHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISS----------PDKNVTI-----AKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEI 678
            L+   PGLK   RGKVRDIYD G+ L++VTTDR SAFD I+   IP KG VL + S +WF Q   I  N +IS+          P  +V        KK   +  E +VRG+++GS     W  Y K   I
Sbjct:    6 LNTDFPGLKLAARGKVRDIYDLGETLLIVTTDRISAFDVIMNEGIPHKGYVLTQISAYWFRQMEDIIKNHIISTDVTDFPKECQPYADVLAGRSMWVKKAKPLAAECIVRGYISGSG----WKDYQKTGAI 132          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_XANOR (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Xanthomonas oryzae pv. oryzae GN=purC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  319 LSETNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEI 678
            +S T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN ++        P+        K   + +K   +PVE + RG++ GS     W  Y +  +I
Sbjct:    3 VSTTLLQSDLPGLPLRHRGKVRDVFDIPRDRLPADAPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFHKTEHLMPNHLVDIRVEQVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSG----WKDYQRTGKI 144          
The following BLAST results are available for this feature:
BLAST of FC931387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
PUR7_SALTO1.959e-1545.16Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOLS1.959e-1545.95Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOSF3.341e-1541.32Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_ELUMP3.341e-1538.81Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_XANAC4.364e-1535.62Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_XANC55.699e-1535.62Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_STRCO5.699e-1542.73Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_XANOP7.444e-1534.93Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOBB7.444e-1541.22Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_XANOR9.722e-1534.93Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionC34104E12EF PostHarvP1 Citrus clementina cDNA clone C34104E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931387 ID=FC931387; Name=FC931387; organism=Citrus clementina; type=EST; length=702bp
GAAAATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCC
TCCAAAAACCCCACTTCACAGCAACAAAATCTCAGCTCCAAAACTCTCAT
TCTCATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCA
AACAATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAGCCAGAA
CCAGAACCAGAACCAAAACCACCACCACCACCAACAACACTTGTCTCTTG
ATGCTGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAA
GGCTCGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCC
CGGTCTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCG
GGGATTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGA
ATTCTTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTT
GTGGTGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCAT
CTCCAGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTT
GAATTTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTG
GACGGTTTACATAAAGGCATCCGAAATTATTGTGGCAATGCTCTTCAGAT
GG
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