FC931387

Overview
NameFC931387
Unique NameFC931387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_AZOSB (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Azoarcus sp. (strain BH72) GN=purC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  343 TVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN--------AVISSPDK-----NVTIAKKCSVIPVEFVVRGFVTGS 633
            T+  L    RGKVRDIY    D L++VT+DR SAFD IL + IP KG+VL   + +WF +  HI PN        +V+++ ++        + K+   +P+E VVRG+V GS
Sbjct:    9 TIKSLPLLGRGKVRDIYAVDADKLLIVTSDRLSAFDVILPNPIPDKGRVLTAMANFWFAKLGHIVPNQLTGIDPESVVAADEREQVKGRALVVKRLKPLPIEAVVRGYVIGS 120          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_POLNA (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=purC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  370 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVI-SSPDKNVTIA------------KKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEI 678
            RGKVRD Y  G D L++V +DR SAFD IL   IP KG +L + +L+WFD+   I PN +   +P+  VT A            K+   IPVE VVRG++ GS     W  Y ++  +
Sbjct:   21 RGKVRDNYAVGNDRLLMVASDRLSAFDVILGEPIPGKGALLTQMALFWFDKLGSICPNHLTGEAPESVVTAAEIPQVAGRSMLVKRLKPIPVEAVVRGYLAGSG----WVEYQQSQSV 134          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_RALME (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=purC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  319 LSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------AVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGS 633
            +S+     ++  L    +GKVRD Y  G D L++VTTDR SAFD IL   IP KG+VLN+ + +WF +  HI PN         + +P++         + K+   I VE VVRG++ GS
Sbjct:    1 MSDALYESSIQSLPLLGKGKVRDNYAVGDDKLLIVTTDRLSAFDVILGEPIPAKGRVLNQMANFWFKKLAHIVPNHETDVTAESVVAPNEVEQVKGRAVVVKRLKPILVEAVVRGYLAGS 120          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_DESPS (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Desulfotalea psychrophila GN=purC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  319 LSETNLHLTVPGLKSKTRGKVRDIY---DGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISS-----PDK----------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVY 660
            ++E  L    P L     GKVRD+Y      D L++V TDR SA+D IL++IP KG +L + SL+WFD    I  N +I++     P+              + K+   +P+E +VRG+++G    S W  Y
Sbjct:    1 MTEAMLTTDFPQLNLVHSGKVRDMYAIPGHDDKLLMVATDRISAYDVILSAIPGKGAILTQLSLFWFDLLADIVDNHMITADVTEYPEACAPYAEQLRGRSILVKRTKPLPIECIVRGYISG----SFWKAY 128          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_METPP (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Methylibium petroleiphilum (strain PM1) GN=purC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  343 TVPGLKSK-------TRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN--------AVISSPDKNVT-----IAKKCSVIPVEFVVRGFVTGS 633
            T P L+S+        RGKVRD Y  G D L++V +DR SAFD ++   IP KG++L   +L+WF +  HI PN        +V+S+ +++       + K+   +PVE VVRG++ GS
Sbjct:    4 TTPLLESRLQSLPLLARGKVRDNYAVGSDRLLMVASDRLSAFDVVMGEPIPGKGELLTRMALFWFARLGHIVPNHLTGDAPESVVSAAERSQVTGRSMLVKRLKPLPVEAVVRGYLAGS 122          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_LEPIN (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Leptospira interrogans GN=purC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  370 RGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDK--------------NVTIAKKCSVIPVEFVVRGFVTGS 633
            +GKVRDIYD GD L+L ++DR SAFD +    +P KG+VLN  S+ WF+  + + PN ++ +  K                 + KKC  I  E VVRG+++GS
Sbjct:    6 KGKVRDIYDLGDKLILSSSDRISAFDVVFPQLVPDKGKVLNRISVSWFEFFKDV-PNHILETDVKYFPIPFQNHPDLEGRSVLVKKCKRIDYECVVRGYISGS 107          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_LEPIC (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=purC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  370 RGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDK--------------NVTIAKKCSVIPVEFVVRGFVTGS 633
            +GKVRDIYD GD L+L ++DR SAFD +    +P KG+VLN  S+ WF+  + + PN ++ +  K                 + KKC  I  E VVRG+++GS
Sbjct:    6 KGKVRDIYDLGDKLILSSSDRISAFDVVFPQLVPDKGKVLNRISVSWFEFFKDV-PNHILETDVKYFPIPFQNHPDLEGRSVLVKKCKRIDYECVVRGYISGS 107          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_HALHL (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=purC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  373 GKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV-------------TIAKKCSVIPVEFVVRGFVTGS 633
            GKVRDIY   D  L++V TDR SAFD IL   IP KG VL   S +WF +T H+  N ++ +P ++V              + ++   +PVE +VRG++ GS
Sbjct:   21 GKVRDIYAVDDERLLIVATDRLSAFDVILPDPIPDKGAVLTRVSNFWFRKTAHLAANHLLDTPPESVVAPEEADQVRDRGVVVRRLQALPVEAIVRGYLAGS 122          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_RALEH (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=purC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 47/124 (37.90%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  307 LSNRLSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------AVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGS 633
            +SN L +++++     L     GKVRD Y  G D L++VTTDR SAFD I+   IP KG+VLN+ + +WF +  HI PN         + +P++         + K+   I VE VVRG++ GS
Sbjct:    1 MSNALYQSSIN----SLPLLGHGKVRDNYAVGNDKLLIVTTDRLSAFDVIMGEPIPDKGRVLNQMANFWFRKLAHIVPNHETGIAPETVVAPEEVEQVKGRAVVVKRLRPILVEAVVRGYLAGS 120          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_PASMU (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Pasteurella multocida GN=purC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  340 LTVPGLKSKTRGKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVI----------SSPDK---NVTIAKKCSVIPVEFVVRGFVTGS 633
            +T   LK    GKVRD+Y+  D  +++V TDR SAFD IL   IP KG++L + S +WF+Q  HI PN                DK      + K+ + I +E +VRG++TGS
Sbjct:    1 MTQLSLKKIYSGKVRDLYEIDDKRMLMVATDRLSAFDVILDDPIPRKGEILTQISNFWFNQLAHIMPNHFTGDTVYDVLPKEEADKVKDRAVVCKRLTPIKIESIVRGYLTGS 113          
The following BLAST results are available for this feature:
BLAST of FC931387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
PUR7_AZOSB1.006e-1140.18Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_POLNA1.716e-1140.68Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_RALME2.241e-1138.33Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_DESPS2.241e-1134.09Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_METPP2.927e-1137.82Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEPIN2.927e-1139.81Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEPIC2.927e-1139.81Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_HALHL2.927e-1140.20Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_RALEH4.993e-1137.90Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_PASMU6.521e-1138.94Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionC34104E12EF PostHarvP1 Citrus clementina cDNA clone C34104E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931387 ID=FC931387; Name=FC931387; organism=Citrus clementina; type=EST; length=702bp
GAAAATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCC
TCCAAAAACCCCACTTCACAGCAACAAAATCTCAGCTCCAAAACTCTCAT
TCTCATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCA
AACAATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAGCCAGAA
CCAGAACCAGAACCAAAACCACCACCACCACCAACAACACTTGTCTCTTG
ATGCTGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAA
GGCTCGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCC
CGGTCTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCG
GGGATTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGA
ATTCTTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTT
GTGGTGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCAT
CTCCAGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTT
GAATTTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTG
GACGGTTTACATAAAGGCATCCGAAATTATTGTGGCAATGCTCTTCAGAT
GG
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