FC931390

Overview
NameFC931390
Unique NameFC931390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3958 contig Ccv1_Contig3958:252..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK4_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 68/201 (33.83%), Postives = 109/201 (54.23%), Query Frame = 1
Query:  136 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFISTVI 723
            +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V  +A E A+ +C + Y ++P+   T +
Sbjct:   35 LSMKQLLDFGSENACERTSFS--FLRQELPVRLANILKEIDILPEHLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKVLSDFVDTLVKVRNRHHNVVPTMAQGILEYKDNCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVEDAFECAKMLCDQYYLTSPELKLTQV 230          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.046e-22
Identity = 70/197 (35.53%), Postives = 108/197 (54.82%), Query Frame = 1
Query:  136 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPD 705
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L     +P+   H IG I+     V+V ++  E+AR +C   Y ++P+
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPE 247          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK1_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.046e-22
Identity = 70/197 (35.53%), Postives = 108/197 (54.82%), Query Frame = 1
Query:  136 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPD 705
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L     +P+   H IG I+     V+V ++  E+AR +C   Y ++P+
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPE 247          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK1_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 70/199 (35.18%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  136 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH------NPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPD 705
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   DFT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L       +P+   H IG I+   + ++V ++  E+AR +C   Y ++P+
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKH-IGSINPNCNVLEVIKDGYENARRLCDLYYINSPE 249          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK4_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 72/227 (31.72%), Postives = 120/227 (52.86%), Query Frame = 1
Query:   61 KKLSETFSKTLI-EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFISTVI 723
            +  S   S +L+  EV  +     + +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   +F   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V ++A E A+ +C + Y ++P+   T +
Sbjct:    9 RSASSLSSASLVPREVELFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPDRLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKALSEFVDTLVKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVQDAFECAKMLCDQYYLTSPELNLTQV 230          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK4_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 70/213 (32.86%), Postives = 113/213 (53.05%), Query Frame = 1
Query:  100 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFISTVI 723
            EV  +     + +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V ++A E +R +C + Y S+P+   T +
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQV 230          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK4_SPETR ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 66/201 (32.84%), Postives = 110/201 (54.73%), Query Frame = 1
Query:  136 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFISTVI 723
            +S++ +++FGS    +    S  FL +ELP+R+A    E++ LP  L+   +V  V+ WY+ S  +L  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID K   V V ++A E ++ +C + Y ++P+   T +
Sbjct:   35 LSMKQLLDFGSDNACERTSFS--FLRQELPVRLANILKEIDVLPDRLTNTSSVQLVKSWYIQSLMELVEFHE-KSPEDQKNLSDFVDTLIKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QSLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPKCDVVAVIQDAFESSKMLCDQYYLTSPELKLTQV 230          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK4_RHIFE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 68/213 (31.92%), Postives = 114/213 (53.52%), Query Frame = 1
Query:  100 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFISTVI 723
            EV  +     + +S++ +++FGS+   +    S+ FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  +L  F + RS  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID   +   V ++A E +R +C + Y ++P+   T +
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SSAFLRQELPVRLANILKEIDILPDRLVNTSSVQLVKSWYIQSLMELVEFHE-RSPDDQKVLSDFVDTLITVRNRHHNVVPTMAQGIIEYKDSCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCNVAAVVQDAFECSRMLCDQYYLTSPELKLTQV 230          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK_ASCSU ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.787e-21
Identity = 74/223 (33.18%), Postives = 112/223 (50.22%), Query Frame = 1
Query:   61 KKLSETFSKTLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSF------PDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAP 702
            ++L   F+  +  ++  +   + + ++++  ++FG   T K+  +   FL  EL +R+A    E+  LP  L + P+   V +WY +SF DL  F      PDI S      F   ++ I  RH+ VV  MA GL +L++     I  E    I  FLDRFY++RI IRML  QH+ +     P  P H IG ID       V  +A E+AR +C R Y +AP
Sbjct:    5 RRLLGPFTSAIARKLEHYSQFQPSSLTIQQYLDFGQTGTMKSSFL---FLKNELLVRLANIMQEISLLPPTLLKMPSRRLVSNWYCESFEDLLQFEHAQVEPDIMS-----KFNDQLQTILKRHSRVVETMAEGLIELRESEGVDIASE--RGIQYFLDRFYINRISIRMLQNQHLVVFGVVLPESPRH-IGCIDPGCDVESVVHDAYENARFLCERYYLTAP 216          
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.411e-19
Identity = 71/218 (32.57%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   61 KKLSETFSKTLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAP 702
            +KL   F  +L +++  +   + + ++++  ++FG   T  N   S  FL  EL +R+A    E   LP  L + P+   V +WY +SF DL  F    S+ ++   F   +  +  RH +VV  MA GL +L++     I  E    I  FLDRFY++RI IRML  QH+ +     P  P H +G ID       V  +A E+AR +C R Y ++P
Sbjct:    5 RKLLGPFVGSLAKKLDYYSQFQPSSLTIQQYLDFGRIGTSAN---SYTFLKNELLVRLANIMQEFTLLPPKLLQMPSSKMVSNWYAESFEDLLLFEASDSSPEQVARFNDQLTVVLKRHAHVVETMAEGLIELRESDGVDIASE--KGIQYFLDRFYINRISIRMLQNQHLVVFGNVLPESPRH-VGCIDPACDVESVVYDAFENARFLCDRYYLTSP 216          
The following BLAST results are available for this feature:
BLAST of FC931390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK4_RAT8.007e-2333.83[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_RAT1.046e-2235.53[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_MOUSE1.046e-2235.53[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_HUMAN2.330e-2235.18[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_MOUSE3.043e-2231.72[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_HUMAN3.974e-2232.86[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_SPETR8.852e-2232.84[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RHIFE8.852e-2231.92[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK_ASCSU9.787e-2133.18[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDHK2_CAEEL2.411e-1932.57Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]

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Properties
Property NameValue
Genbank descriptionC34104F03EF PostHarvP1 Citrus clementina cDNA clone C34104F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931390 ID=FC931390; Name=FC931390; organism=Citrus clementina; type=EST; length=736bp
GAAAATAGGAATTGGATTTTTTGTGAGAAAGCAGAAGCCAGAAGCAGCAA
TGGCTGACGTAAGAAATTGTCGGAGACGTTTTCGAAGACCTTGATCGAGG
AGGTTGGGCGATGGGGATGCATGAAACAGACAGGTGTGAGCTTGAGGTAC
ATGATGGAGTTTGGCTCAAAACCTACAGACAAAAATTTGCTAATTTCTGC
TCAGTTTCTTCACAAAGAGCTTCCAATTAGAATCGCCAGACGAGCAATTG
AGCTCGAGACACTTCCTTACGGTTTATCCGAGAAGCCTGCCGTTTTGAAG
GTTCGAGACTGGTATTTGGACTCATTTCGTGATTTGAGGTCGTTTCCTGA
CATCAGAAGTACGAGTGATGAGAGGGATTTTACGCAAATGATTAAGGCGA
TTAAGGTGAGGCATAATAATGTGGTGCCCATGATGGCGTTGGGGCTGCAA
CAATTGAAGAAAGAGATGGATCCCAAGATTGTTTACGAGGATCTTGATGA
GATTCATCAGTTTCTGGATCGGTTTTACATGTCTAGGATCGGAATTCGTA
TGCTTATTGGGCAGCATGTAGAATTGCACAATCCCAACCCTCCACCTCAT
TGTATTGGCTACATAGACACAAAAATGTCTCCAGTGCAGGTTGCTAGGAA
TGCTAGTGAGCATGCACGTTGTGTTTGTCTGCGGGAGTATGGCAGTGCAC
CCGATTTTATATCTACGGTGATCCAGTTTTACATTC
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