FC931390

Overview
NameFC931390
Unique NameFC931390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3958 contig Ccv1_Contig3958:252..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931390 vs. ExPASy Swiss-Prot
Match: PDK_SCHPO ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC644.11c PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 39/106 (36.79%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:  376 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYG 693
            +F  ++  I+ RH+NV   +AL +Q+ +++ +     +  + I  FLDRFYMSRIGIRML+GQ++ L +  P  + +G I T+ +  Q+   A+E+A+ +C   YG
Sbjct:  166 NFAYLLNTIRTRHDNVAVEIALDIQEYRRKTN-----QIDNSIQIFLDRFYMSRIGIRMLLGQYIALVSEPPRENYVGVISTRANIYQIIEGAAENAKYICRLAYG 266
The following BLAST results are available for this feature:
BLAST of FC931390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK_SCHPO6.794e-1436.79[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC34104F03EF PostHarvP1 Citrus clementina cDNA clone C34104F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931390 ID=FC931390; Name=FC931390; organism=Citrus clementina; type=EST; length=736bp
GAAAATAGGAATTGGATTTTTTGTGAGAAAGCAGAAGCCAGAAGCAGCAA
TGGCTGACGTAAGAAATTGTCGGAGACGTTTTCGAAGACCTTGATCGAGG
AGGTTGGGCGATGGGGATGCATGAAACAGACAGGTGTGAGCTTGAGGTAC
ATGATGGAGTTTGGCTCAAAACCTACAGACAAAAATTTGCTAATTTCTGC
TCAGTTTCTTCACAAAGAGCTTCCAATTAGAATCGCCAGACGAGCAATTG
AGCTCGAGACACTTCCTTACGGTTTATCCGAGAAGCCTGCCGTTTTGAAG
GTTCGAGACTGGTATTTGGACTCATTTCGTGATTTGAGGTCGTTTCCTGA
CATCAGAAGTACGAGTGATGAGAGGGATTTTACGCAAATGATTAAGGCGA
TTAAGGTGAGGCATAATAATGTGGTGCCCATGATGGCGTTGGGGCTGCAA
CAATTGAAGAAAGAGATGGATCCCAAGATTGTTTACGAGGATCTTGATGA
GATTCATCAGTTTCTGGATCGGTTTTACATGTCTAGGATCGGAATTCGTA
TGCTTATTGGGCAGCATGTAGAATTGCACAATCCCAACCCTCCACCTCAT
TGTATTGGCTACATAGACACAAAAATGTCTCCAGTGCAGGTTGCTAGGAA
TGCTAGTGAGCATGCACGTTGTGTTTGTCTGCGGGAGTATGGCAGTGCAC
CCGATTTTATATCTACGGTGATCCAGTTTTACATTC
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