FC931395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 8.758e-72 Identity = 134/228 (58.77%), Postives = 162/228 (71.05%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S+V+ GWFSE +PMWPGEAHSLKV++ILF+GKS+YQ V+VF+S YGKVLVLDG++QLTE+DECAYQEMIAHLPLCSIPSPK V SK++FP++AVGFEDPRV LHIGD V FL+ VP G YDAIIVDSSDP+GPAQEL EKPFF+++AKALRPGGV+C AES+WLH H+IED+++ CR+ Sbjct: 21 SSVIPGWFSEI--------------SPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPSPKKVLVIGGGDGGVLREVARHLSVEQIDICEIDKMVVDVSKQFFPDVAVGFEDPRVVLHIGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQ 234
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 3.679e-70 Identity = 129/233 (55.36%), Postives = 164/233 (70.39%), Query Frame = 1 Query: 115 DAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 ++ C S+V+ GWFSE +P+WPGEAHSLKV++ILF+GKS+YQ+V+VF+S YGKVLVLDG++QLTE+DECAYQEMI HLPLCSIP+PK V +K++FP++AVG+EDPRV LHIGD V FL+ VP G YDA+IVDSSDP+GPAQEL EKPFF+TIA+ALRPGGV+ AES+WLH H+IE++++ CRE Sbjct: 18 ESPCISSVLPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFETIARALRPGGVVSTQAESIWLHMHIIEEIVANCRE 236
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.115e-69 Identity = 127/228 (55.70%), Postives = 159/228 (69.74%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S+V+ GWFSE +PMWPGEAHSLKV++ILF+GKS+YQ+V+VF+S YGKVL+LDG++QLTE+DECAYQEMI HLPLCSIP+PK V SK+YFP++AVGF DPRV L+IGD V FL+ P G YDA+IVDSSDP+GPAQEL EKPFF+++A+ALRPGGV+C AES+WLH H+IED++ CR+ Sbjct: 40 SSVIPGWFSEI--------------SPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEYFPDIAVGFADPRVTLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQ 253
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.115e-69 Identity = 130/259 (50.19%), Postives = 168/259 (64.86%), Query Frame = 1 Query: 37 KESNKNGSAGAIPSCCLKARASAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 +E + NG A ++ + + C STV+ GWFSE +PMWPGEAHSLKV+++LF+GKS+YQ+V+VF+S YGKVLVLDG++QLTE+DECAYQEMI HLPLCSIP+PK V SK++FP++A+G+EDPRV L IGD V FL+ G YDA+IVDSSDP+GPA+EL EKPFF ++A+ALRPGGV+C AES+WLH +IED++S CRE Sbjct: 15 REEDDNGGAAT-----METENGDQKKEPACFSTVIPGWFSEM--------------SPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCRE 254
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 5.313e-69 Identity = 125/228 (54.82%), Postives = 160/228 (70.18%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S+++ GWFSE +P+WPGEAHSLKV++ILF+GKS+YQ V+VF+S YGKVLVLDG++QLTE+DECAYQEMI HLPLCSIP+PK V SK++FP +A+G+EDPRV+LH+GD V FL+ VP G YDA+IVDSSDP+GPAQEL EKPFF+++A+AL PGGV+C AES+WLH H+IED++S CR+ Sbjct: 13 SSILPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQFFPNVAIGYEDPRVKLHVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALCPGGVVCTQAESIWLHMHIIEDIVSNCRQ 226
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.184e-68 Identity = 128/228 (56.14%), Postives = 160/228 (70.18%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S+V+ GWFSE +P+WPGEAHSLKV++ILF+GKS+YQ VLVF+S YGKVLVLDG++QLTE+DECAYQEMI HLPLCSIP+PK V +K++FP++AVG+EDPRV LHIGD V FL+ VP G YDA+IVDSSDP+GPAQEL EKPFF++IAKALRPGGV+ AES+WLH H+IE++++ CR+ Sbjct: 48 SSVLPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFESIAKALRPGGVVSTQAESIWLHMHIIEEIVANCRQ 261
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.184e-68 Identity = 127/228 (55.70%), Postives = 155/228 (67.98%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S V+ GWFSE +PMWPGEAHSLKV+++LF+GKS+YQ V+VF+S YGKVLVLDG++Q+TE+DECAYQEMI HLPLCSI PK V SK++FP LAVGFEDPRV LHIGD V FL+ P G YDA+IVDSSDP+GPAQEL EKPFF ++A+ALRPGGV+C AES+WLH H+IED+++ CR+ Sbjct: 28 SAVIPGWFSEI--------------SPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFPHLAVGFEDPRVSLHIGDGVAFLKNAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQ 241
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 2.019e-68 Identity = 128/227 (56.39%), Postives = 156/227 (68.72%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 705 S+V+ GWFSE +PMWPGEAHSLK+++ILF+GKSEYQ+V+VF+S YGKVLVLDG++QLTE+DECAYQEMI HLPLCSIP+PK V SK++FPE+AVGF DPRV L IGD V FL+ P G YDA+IVDSSDP+GPAQEL EKPFF ++A+ALRPGGV+C AES+WLH +IED++S CR Sbjct: 48 SSVIPGWFSEI--------------SPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCR 260
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 2.637e-68 Identity = 123/228 (53.95%), Postives = 160/228 (70.18%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S+++ GWFSE +P+WPGEAHSLKV++ILF+GKS+YQ V+VF+S YGKVL+LDG++QLTE+DECAYQEMI HLPLCSIP+PK V SK++FP +A+G+EDPRV+LH+GD V FL+ V G YDA+IVDSSDP+GPAQEL EKPFF+++A+ALRPGGV+C AES+WLH H+IED+++ CR+ Sbjct: 13 SSILPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKQFFPNVAIGYEDPRVKLHVGDGVAFLKFVAEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQ 226
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 4.498e-68 Identity = 126/228 (55.26%), Postives = 160/228 (70.18%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 S+V+ GWFSE +P+WPGEAHSLKV++ILF+GKS+YQ V+VF+S YGKVLVLDG++QLTE+DECAYQEMI HLPLCSIP+PK V +K++FP++AVG+EDPRV LHIGD V FL+ VP G YDA+IVDSSDP+GPAQEL EKPFF++IA+ALRPGGV+ AES+WLH H+IE++++ CR+ Sbjct: 21 SSVLPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKEFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQ 234 The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bpback to top |