FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SYNE7 (Spermidine synthase OS=Synechococcus elongatus (strain PCC 7942) GN=speE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 57/211 (27.01%), Postives = 96/211 (45.50%), Query Frame = 1
Query:  208 PMWPGEAHSLKVK-----EILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES----MWLHTHLIEDMISICRE 708
            P+W  E    +V+     +IL++  S +Q++ + ++  YG+ L+LD      E+ E  Y E + H PL +  S   V                                   S++Y   +   + DPR+ + IGD + F++  P   YD I+VD SDP GPA  L  + F++   + L+PGGV  + AES    + +H  +IE + ++  E
Sbjct:    6 PVWIDEVFEDRVRYGLRGQILWEETSPFQKITIVDTEHYGRGLLLDDCWMTAERCEVCYHEYLVHPPLTTAASIARVLVIGGGDGGTVREVLRYAEVEQVDLVEIDGRVVELSQEYLGAIGTAWADPRLNVKIGDGIAFVQTAPDASYDVILVDGSDPAGPAAGLFNREFYENCRRVLKPGGVFASQAESPDSFLAVHLEMIETLSAVFAE 216          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THET8 (Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 65/200 (32.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:  193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVG---PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTH 675
            MYF   + P E    +++ ++  GK+ +Q+  +FES  +GKVL+LD  VQ TE+DE  Y E + H  + + P PK                                    V+K++ PE   G F+DPR  L I DA  +L +     YD +I+D +DPVG   PA+ L    F+  +   L PGGV+  M   M L TH
Sbjct:    5 MYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVM-GMQAGMILLTH 202          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THET2 (Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 65/200 (32.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:  193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVG---PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTH 675
            MYF   + P E    +++ ++  GK+ +Q+  +FES  +GKVL+LD  VQ TE+DE  Y E + H  + + P PK                                    V+K++ PE   G F+DPR  L I DA  +L +     YD +I+D +DPVG   PA+ L    F+  +   L PGGV+  M   M L TH
Sbjct:    5 MYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVM-GMQAGMILLTH 202          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_HAMD5 (Spermidine synthase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=speE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 52/183 (28.42%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  211 MWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            +W  + HS       +KE+L++ K+++Q++++F++  +G+V+ L+ +VQ TE+DE  Y EM+ H+PL +    K V                                    ++YFP    G ++DPR +L I D   F+ Q     +D II DS+DP+GP + L +  F+    + L  GG+
Sbjct:    6 LWYEKLHSSFGQYFSIKEVLYRDKTDHQDLIIFDTEEFGRVMALNHVVQTTERDEFIYHEMMTHVPLLAHGDAKKVLIIGGGDGGILREVCRHAGVKEIIMVEIDQDVVNLCQEYFPHHHAGAYDDPRFQLKIDDGAHFVEQT-NHRFDLIISDSTDPIGPGEHLFKSSFYQACRRILNAGGL 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SODGM (Spermidine synthase OS=Sodalis glossinidius (strain morsitans) GN=speE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 54/168 (32.14%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V  +L++  +  Q++++FE+ A G+V+ LDG+VQ TE+DE  Y EM+AH+PL +    K                                   T  K+Y P    G F+DPR +L I D V F+ Q    ++D II D +DP+GP + L    F+   A+ L  GG+
Sbjct:   21 VDNLLYRDTTGQQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMAHVPLIAHGGAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVTFCKQYLPRHNAGAFDDPRFKLVIADGVNFVSQSSE-KFDVIISDCTDPIGPGESLFTSNFYQDCARCLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ERWT9 (Spermidine synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=speE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  205 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            N MW    H+       V +I+++ K+++Q++++FE+ A G+V+ LDG+VQ TE+DE  Y EM+ H+PL +  +PK                                   T  ++Y P    G ++D R +L I D V F+ Q    ++D II D +DP+GP + L    F+    + L   G+
Sbjct:    4 NEMWYETLHTGFGQYFSVDKIIYREKTDHQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGAPKRVLIIGGGDGAMLREVCRHKNIEQITMVEIDAGVVTFCRQYLPNHNAGAYDDARFKLVIDDGVNFVNQT-SDKFDVIISDCTDPIGPGESLFTSEFYQGCRRCLNQDGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THENN (Spermidine synthase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=speE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  235 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDP-VGPAQELVEKPFFDTIAKALRPGGV 636
            +K+  +++ G+S+ Q + +FE+   G V  LDGI   TEKDE  Y EM+AH+P+   P+PK V                                   ++KY  + + GF+DPR  + I +  E++R+  + E+D II+DS+DP  G    L  + F+     AL+  GV
Sbjct:   32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGV 200          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THEMA (Spermidine synthase OS=Thermotoga maritima GN=speE PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  235 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDP-VGPAQELVEKPFFDTIAKALRPGGV 636
            +K+  +++ G+S+ Q + +FE+   G V  LDGI   TEKDE  Y EM+AH+P+   P+PK V                                   ++KY  + + GF+DPR  + I +  E++R+  + E+D II+DS+DP  G    L  + F+     AL+  GV
Sbjct:   32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGV 200          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THEP1 (Spermidine synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=speE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  235 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDP-VGPAQELVEKPFFDTIAKALRPGGV 636
            +K+  +++ G+S+ Q + +FE+   G V  LDGI   TEKDE  Y EM+AH+P+   P+PK V                                   ++KY  + + GF+DPR  + I +  E++R+  + E+D II+DS+DP  G    L  + F+     AL+  GV
Sbjct:   32 MKINRMIYSGQSDIQRIDIFENPDLGVVFSLDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAVLCEVDGLVIEAARKYLKQTSCGFDDPRTEIVIANGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGV 200          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SYNS3 (Spermidine synthase OS=Synechococcus sp. (strain CC9311) GN=speE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 55/189 (29.10%), Postives = 82/189 (43.39%), Query Frame = 1
Query:  250 ILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            +L +  S +Q + V +S  YGK L+LDG     E  E  Y E + H  LCS  + + V                                   S+++ P +  G + DPR  L IGD + +  +     YD ++VD SDP GPA+ L  + FF    + L+PGGV    +ES      +  DM+ + RE
Sbjct:   27 VLVEETSPFQRITVIDSQRYGKGLLLDGCWMTAEHQERHYHEALVHPALCSAKAIERVLVIGGGDGGTARECLRYPGVKHLDMVEIDGRVVDLSQEHLPSIGGGCWHDPRFHLTIGDGIAWAAEAENAFYDVVLVDGSDPTGPAEGLFNRAFFSNCCRILKPGGVFATQSESPEAFRQVHIDMVKLIRE 215          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_SYNE71.467e-1827.01Spermidine synthase OS=Synechococcus elongatus (st... [more]
SPEE_THET82.503e-1832.50Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_THET22.503e-1832.50Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_HAMD53.269e-1828.42Spermidine synthase OS=Hamiltonella defensa subsp.... [more]
SPEE_SODGM4.269e-1832.14Spermidine synthase OS=Sodalis glossinidius (strai... [more]
SPEE_ERWT94.269e-1829.19Spermidine synthase OS=Erwinia tasmaniensis (strai... [more]
SPEE_THENN1.242e-1730.59Spermidine synthase OS=Thermotoga neapolitana (str... [more]
SPEE_THEMA1.242e-1730.59Spermidine synthase OS=Thermotoga maritima GN=speE... [more]
SPEE_THEP12.119e-1730.59Spermidine synthase OS=Thermotoga petrophila (stra... [more]
SPEE_SYNS32.767e-1729.10Spermidine synthase OS=Synechococcus sp. (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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