FC931395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PHOLL (Spermidine synthase OS=Photorhabdus luminescens subsp. laumondii GN=speE PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16 Identity = 50/168 (29.76%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636 V ++L+ K+E+Q++++FE+ G+++ LDG VQ TE+DE Y EM+AH+PL + + K V ++Y P G ++DPR L I D V F+ + ++D II D +DP+GP + L F+ + L GG+ Sbjct: 21 VDKVLYHDKTEHQDLIIFENATLGRIMALDGTVQTTERDEFIYHEMMAHVPLFAHGNAKRVLIIGGGDGGMLREVCRHQYLESITMVEIDAGVVEFCRQYLPNHNAGAYDDPRFNLIIDDGVNFVNTTDQ-KFDVIISDCTDPIGPGEGLFTSEFYQGCQRCLNEGGI 187
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PROMM (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=speE PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16 Identity = 53/189 (28.04%), Postives = 81/189 (42.86%), Query Frame = 1 Query: 250 ILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 +L S YQ + V +S YGK L+LDG E E Y E + H LCS + V S+K+ P L + DPR++L++ + + ++ YD I++D SDP GPA+ L + FF+ + LRPGGV +ES + D + + R+ Sbjct: 27 VLVDETSPYQRITVIDSSRYGKGLLLDGCWMTAEHQERHYHESLVHPALCSAAQLERVLVIGGGDGGTARECLRYQDVKHLDMVEIDRRVVELSQKHLPSLGSHAWSDPRLQLNLENGIAWVANATESSYDVILIDGSDPAGPAEGLFNQTFFEHCRRILRPGGVFATQSESPEAFRQVHIDTVRLIRQ 215
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PROM3 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=speE PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15 Identity = 62/229 (27.07%), Postives = 90/229 (39.30%), Query Frame = 1 Query: 130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 ST SGW E G + L+ + +L KS YQ + V +S YGK L+LDG E E Y E + H LCS + V S+K+ P + + D R++L++ D + + YD I+VD SDP GPA+ L + FF + LRPGGV +ES + D + + R+ Sbjct: 5 STTASGWIDEHHQ-----------------GVRYGLQGR-VLVDEKSPYQRITVIDSSRYGKGLLLDGCWMTAEHQERHYHESLVHPALCSAAQLERVLVIGGGDGGTARECLRYQDVKHLDMVEIDGRVVELSQKHLPSIGGHAWSDARLQLNLEDGIAWTANATDSSYDVILVDGSDPTGPAEGLFNEAFFKQCRRILRPGGVFATQSESPEAFRQIHIDTVRLIRQ 215
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SYNPX (Spermidine synthase OS=Synechococcus sp. (strain WH8102) GN=speE PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15 Identity = 52/190 (27.37%), Postives = 82/190 (43.16%), Query Frame = 1 Query: 247 EILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 ++L + S +Q + V S YGK L+LDG E+ E Y E + H LCS + + V S+++ P + + D R +L +GD + + P YD ++VD SDP GPA+ L + FF+ + L+PGGV +ES + M+ + RE Sbjct: 19 DVLVEETSPFQRISVIRSERYGKGLLLDGCWMTAEQQERHYHEALVHPALCSAEAIERVLVIGGGDGGTARECLRYPEVIHLDLVEIDGRVVELSQEHLPGIGGAVWSDSRCQLTVGDGIAWAANAPDQSYDVVLVDGSDPAGPAEGLFNRAFFEHCRRILKPGGVFATQSESPEAFREVHVAMVRLLRE 208
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ARCFU (Probable spermidine synthase OS=Archaeoglobus fulgidus GN=speE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14 Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 1 Query: 232 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFD 603 ++KVK+ L++ + Q+V ++E+ + GK+LV+DG +QLTE DE Y EM+ H+P+ S +P+ V S+K+ FED RV + I D EFLR +D IIVDS+DPVG + L ++ FF+ Sbjct: 14 AIKVKKKLYEAEG-VQKVEIYETESMGKMLVIDGKIQLTELDEPFYHEMLVHVPMLSHENPRKVAVIGGGDGGALREVLKHNVERAVLVDIDRNVIDLSRKFLKIDHGAFEDERVEIAIMDGKEFLRDCE--IFDVIIVDSTDPVGVSDTLFDREFFE 168
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_NITEU (Spermidine synthase OS=Nitrosomonas europaea GN=speE PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14 Identity = 50/203 (24.63%), Postives = 93/203 (45.81%), Query Frame = 1 Query: 208 PMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708 P+ P L+ E+L + S Q + + ++ +G+ + +DG +E+DE Y E + HLP + P+ +++ + P++ G FEDPR+ LH+GD F + ++D I++D +DP GPA L + F+ +AL+PGGVL +S + ++ +++ R+ Sbjct: 21 PLSPDFGFYLRTTELLAERHSPVQHIEIVQTPLFGRAMRIDGCFMTSEQDEFFYHEPMVHLPAITHGDPRQALVVGGGDGGTAYNLLRYPNMERVVLAELDRDVIDMARTWLPKVHRGAFEDPRLELHLGDGRAFTGNC-KNQFDQIVLDLTDPFGPAISLYTRDFYRACRRALKPGGVLSLHIQSPIYRSPIMARLLASLRD 222
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIY (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=speE PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 P E H ++++ + K+ YQ V + E +GK L++DG VQ T DE Y E++ H L S+P P K+V +KKY E G FED R L I D ++F+ + + +YDAII+D +DP+ + L K F++ + L GG + A S Sbjct: 13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIN (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=speE PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 P E H ++++ + K+ YQ V + E +GK L++DG VQ T DE Y E++ H L S+P P K+V +KKY E G FED R L I D ++F+ + + +YDAII+D +DP+ + L K F++ + L GG + A S Sbjct: 13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLIITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIM (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=speE PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 P E H ++++ + K+ YQ V + E +GK L++DG VQ T DE Y E++ H L S+P P K+V +KKY E G FED R L I D ++F+ + + +YDAII+D +DP+ + L K F++ + L GG + A S Sbjct: 13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIL (Probable spermidine synthase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=speE PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657 P E H ++++ + K+ YQ V + E +GK L++DG VQ T DE Y E++ H L S+P P K+V +KKY E G FED R L I D ++F+ + + +YDAII+D +DP+ + L K F++ + L GG + A S Sbjct: 13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197 The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bpback to top |