FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PHOLL (Spermidine synthase OS=Photorhabdus luminescens subsp. laumondii GN=speE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 50/168 (29.76%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  241 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 636
            V ++L+  K+E+Q++++FE+   G+++ LDG VQ TE+DE  Y EM+AH+PL +  + K V                                    ++Y P    G ++DPR  L I D V F+    + ++D II D +DP+GP + L    F+    + L  GG+
Sbjct:   21 VDKVLYHDKTEHQDLIIFENATLGRIMALDGTVQTTERDEFIYHEMMAHVPLFAHGNAKRVLIIGGGDGGMLREVCRHQYLESITMVEIDAGVVEFCRQYLPNHNAGAYDDPRFNLIIDDGVNFVNTTDQ-KFDVIISDCTDPIGPGEGLFTSEFYQGCQRCLNEGGI 187          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PROMM (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=speE PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 53/189 (28.04%), Postives = 81/189 (42.86%), Query Frame = 1
Query:  250 ILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            +L    S YQ + V +S  YGK L+LDG     E  E  Y E + H  LCS    + V                                   S+K+ P L    + DPR++L++ + + ++       YD I++D SDP GPA+ L  + FF+   + LRPGGV    +ES      +  D + + R+
Sbjct:   27 VLVDETSPYQRITVIDSSRYGKGLLLDGCWMTAEHQERHYHESLVHPALCSAAQLERVLVIGGGDGGTARECLRYQDVKHLDMVEIDRRVVELSQKHLPSLGSHAWSDPRLQLNLENGIAWVANATESSYDVILIDGSDPAGPAEGLFNQTFFEHCRRILRPGGVFATQSESPEAFRQVHIDTVRLIRQ 215          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_PROM3 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=speE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 62/229 (27.07%), Postives = 90/229 (39.30%), Query Frame = 1
Query:  130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ST  SGW  E                    G  + L+ + +L   KS YQ + V +S  YGK L+LDG     E  E  Y E + H  LCS    + V                                   S+K+ P +    + D R++L++ D + +        YD I+VD SDP GPA+ L  + FF    + LRPGGV    +ES      +  D + + R+
Sbjct:    5 STTASGWIDEHHQ-----------------GVRYGLQGR-VLVDEKSPYQRITVIDSSRYGKGLLLDGCWMTAEHQERHYHESLVHPALCSAAQLERVLVIGGGDGGTARECLRYQDVKHLDMVEIDGRVVELSQKHLPSIGGHAWSDARLQLNLEDGIAWTANATDSSYDVILVDGSDPTGPAEGLFNEAFFKQCRRILRPGGVFATQSESPEAFRQIHIDTVRLIRQ 215          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SYNPX (Spermidine synthase OS=Synechococcus sp. (strain WH8102) GN=speE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 52/190 (27.37%), Postives = 82/190 (43.16%), Query Frame = 1
Query:  247 EILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            ++L +  S +Q + V  S  YGK L+LDG     E+ E  Y E + H  LCS  + + V                                   S+++ P +    + D R +L +GD + +    P   YD ++VD SDP GPA+ L  + FF+   + L+PGGV    +ES      +   M+ + RE
Sbjct:   19 DVLVEETSPFQRISVIRSERYGKGLLLDGCWMTAEQQERHYHEALVHPALCSAEAIERVLVIGGGDGGTARECLRYPEVIHLDLVEIDGRVVELSQEHLPGIGGAVWSDSRCQLTVGDGIAWAANAPDQSYDVVLVDGSDPAGPAEGLFNRAFFEHCRRILKPGGVFATQSESPEAFREVHVAMVRLLRE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ARCFU (Probable spermidine synthase OS=Archaeoglobus fulgidus GN=speE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  232 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFD 603
            ++KVK+ L++ +   Q+V ++E+ + GK+LV+DG +QLTE DE  Y EM+ H+P+ S  +P+ V                                  S+K+       FED RV + I D  EFLR      +D IIVDS+DPVG +  L ++ FF+
Sbjct:   14 AIKVKKKLYEAEG-VQKVEIYETESMGKMLVIDGKIQLTELDEPFYHEMLVHVPMLSHENPRKVAVIGGGDGGALREVLKHNVERAVLVDIDRNVIDLSRKFLKIDHGAFEDERVEIAIMDGKEFLRDCE--IFDVIIVDSTDPVGVSDTLFDREFFE 168          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_NITEU (Spermidine synthase OS=Nitrosomonas europaea GN=speE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/203 (24.63%), Postives = 93/203 (45.81%), Query Frame = 1
Query:  208 PMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            P+ P     L+  E+L +  S  Q + + ++  +G+ + +DG    +E+DE  Y E + HLP  +   P+                                    +++ + P++  G FEDPR+ LH+GD   F     + ++D I++D +DP GPA  L  + F+    +AL+PGGVL    +S    + ++  +++  R+
Sbjct:   21 PLSPDFGFYLRTTELLAERHSPVQHIEIVQTPLFGRAMRIDGCFMTSEQDEFFYHEPMVHLPAITHGDPRQALVVGGGDGGTAYNLLRYPNMERVVLAELDRDVIDMARTWLPKVHRGAFEDPRLELHLGDGRAFTGNC-KNQFDQIVLDLTDPFGPAISLYTRDFYRACRRALKPGGVLSLHIQSPIYRSPIMARLLASLRD 222          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIY (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            P E H   ++++  + K+ YQ V + E   +GK L++DG VQ T  DE  Y E++ H  L S+P P                     K+V               +KKY  E   G FED R  L I D ++F+ +  + +YDAII+D +DP+    +  L  K F++ +   L  GG +   A S
Sbjct:   13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIN (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            P E H   ++++  + K+ YQ V + E   +GK L++DG VQ T  DE  Y E++ H  L S+P P                     K+V               +KKY  E   G FED R  L I D ++F+ +  + +YDAII+D +DP+    +  L  K F++ +   L  GG +   A S
Sbjct:   13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLIITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIM (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            P E H   ++++  + K+ YQ V + E   +GK L++DG VQ T  DE  Y E++ H  L S+P P                     K+V               +KKY  E   G FED R  L I D ++F+ +  + +YDAII+D +DP+    +  L  K F++ +   L  GG +   A S
Sbjct:   13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_SULIL (Probable spermidine synthase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  217 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP---------------------KTV---------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPV--GPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            P E H   ++++  + K+ YQ V + E   +GK L++DG VQ T  DE  Y E++ H  L S+P P                     K+V               +KKY  E   G FED R  L I D ++F+ +  + +YDAII+D +DP+    +  L  K F++ +   L  GG +   A S
Sbjct:   13 PYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTSLVITDGLKFINET-KDKYDAIILDLTDPIKDSTSYMLYTKEFYEKLRGILNQGGGIVTQATS 197          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_PHOLL1.051e-1629.76Spermidine synthase OS=Photorhabdus luminescens su... [more]
SPEE_PROMM8.901e-1628.04Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_PROM31.163e-1527.07Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_SYNPX5.769e-1527.37Spermidine synthase OS=Synechococcus sp. (strain W... [more]
SPEE_ARCFU2.192e-1433.54Probable spermidine synthase OS=Archaeoglobus fulg... [more]
SPEE_NITEU4.884e-1424.63Spermidine synthase OS=Nitrosomonas europaea GN=sp... [more]
SPEE_SULIY2.680e-1230.11Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIN2.680e-1230.11Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIM2.680e-1230.11Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIL2.680e-1230.11Probable spermidine synthase OS=Sulfolobus islandi... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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