FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_MOUSE (Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.038e-40
Identity = 87/227 (38.33%), Postives = 127/227 (55.95%), Query Frame = 1
Query:  130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 705
            + +  GWF E+ S              +WPG+A SL+V+++L   +S YQ++LVF S  YG VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+                                    VSKK+ P +AVGF   ++ LH+GD  EF++Q  +  +D II DSSDP+GPA+ L ++ ++  +  AL+  G+LC   E  WLH  LI++M   C+
Sbjct:   14 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPGMAVGFSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGILCCQGECQWLHLDLIKEMRHFCK 225          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_HUMAN (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 86/227 (37.89%), Postives = 127/227 (55.95%), Query Frame = 1
Query:  130 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK-----------------------------------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 705
            + +  GWF E+ S              +WPG+A SL+V+++L   +S YQ++LVF S  YG VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+                                    VSKK+ P +A+G+   ++ LH+GD  EF++Q  +  +D II DSSDP+GPA+ L ++ ++  +  AL+  GVLC   E  WLH  LI++M   C+
Sbjct:   14 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQ 225          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_LEPBP (Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=speE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A S +V + +   +S +Q++ +FE+ ++G++  LDG+  +T KDE +Y EMIAH+P+ S P+P++V                                   S KYFPE A   +DP+V  H  D  +F R   +G +D I+VDSSDPVGPA+ L ++PFF  +A AL+P G++   AES W H  +I  +
Sbjct:   14 GRAVSYRVTKTIESLQSPFQKIDIFETQSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVREVLKHPSVKEVVLCEIDKAVVDISYKYFPECADAMKDPKVIHHYDDGAKFARD-NKGRFDVILVDSSDPVGPAEVLFKEPFFRDMASALKPTGIIATQAESFWYHGDVITSL 204          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_LEPBA (Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=speE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            G A S +V + +   +S +Q++ +FE+ ++G++  LDG+  +T KDE +Y EMIAH+P+ S P+P++V                                   S KYFPE A   +DP+V  H  D  +F R   +G +D I+VDSSDPVGPA+ L ++PFF  +A AL+P G++   AES W H  +I  +
Sbjct:   14 GRAVSYRVTKTIESLQSPFQKIDIFETQSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVREVLKHPSVKEVVLCEIDKAVVDISYKYFPECADAMKDPKVIHHYDDGAKFARD-NKGRFDVILVDSSDPVGPAEVLFKEPFFRDMASALKPTGIIATQAESFWYHGDVITSL 204          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE2_LEPIN (Spermidine synthase 2 OS=Leptospira interrogans GN=speE2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 67/198 (33.84%), Postives = 106/198 (53.54%), Query Frame = 1
Query:  220 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            G A  +KVKE L    + +Q++ VFES+ +G++  LDG+V +TE DE AY EMI H+P+ S P+P+ V                                     +YFPE+A   +DPRV+    D  ++++   +  +D I+VDSSDPVGPA+ L ++PF++T+A  L+ GG+     ES + H  +I ++ +   E
Sbjct:   15 GRALKIKVKEFLHSRTTPFQKIDVFESVGFGRMFTLDGVVMMTEADEFAYHEMIVHVPMMSHPNPEKVLVIGGGDGGTVREVLKHPSVKEVHLCEIDKGVIDVCYEYFPEIANAMKDPRVKHAYEDGAKYVKDY-QNYFDCIMVDSSDPVGPAEVLFKRPFYETMANCLKEGGICTTQGESFYYHGSIIRELFNFIPE 211          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPSY_YEAST (Spermine synthase OS=Saccharomyces cerevisiae GN=SPE4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 75/229 (32.75%), Postives = 116/229 (50.66%), Query Frame = 1
Query:  127 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGE----YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGG-VLCNMAESMWLHTHLIEDM 690
            H  +  GWF E              N+  +PG+A ++ V  IL++ +SE+Q++L+F +  YG VLVLDGIVQ TE DE AYQEMI H+ + +  +PK V                                   S+K+ P L+ G F+D R+ L + D  +FL+ +   +    +D II DSSDP GPA+   ++ +F+ +  AL P G V+   +E+ WL+   + D+
Sbjct:    7 HPYIKDGWFRE-------------INDKSFPGQAFTMTVDSILYEARSEFQDILIFRNKVYGTVLVLDGIVQCTEFDEFAYQEMITHIAMFAHSNPKRVLIIGGGDGGVLREVAKHSCVEDITMVEIDSSVIELSRKFLPTLSNGAFDDERLDLKLCDGFKFLQDIGASDVHKKFDVIITDSSDPEGPAEAFFQERYFELLKDALNPNGVVIMQSSENFWLNLKYLHDL 222          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE1_THETN (Spermidine synthase 1 OS=Thermoanaerobacter tengcongensis GN=speE1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  232 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            S+KVKE L   K+ YQ + + +S  +G+VLVLDGI+Q TEKDE  Y EMI H+PL +  +PK V                                   SKKY P ++   +DPRV + IGD ++++ +  + E+D +IVDS+DP+GPA  L    F+  + + LR  G++    ES +++  LI  +  + +E
Sbjct:   16 SIKVKETLVVEKTPYQHLAILDSYQFGRVLVLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKDVLIIGGGDGGSVREVLKHSSVERVVLAEIDEAVIRNSKKYLPTISSALDDPRVEIMIGDGIKYVNE-HKNEFDVVIVDSTDPIGPAVGLFTSDFYRAVYECLREDGIIVAQTESPFIYGKLINKISKMFKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THEPX (Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 65/194 (33.51%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  232 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            SLKVKE L   K+ YQ + + ++  +G+VL LDGI+Q TEKDE  Y EMI H+PL +  +PK+V                                   SKKY P ++   +DPRV + IGD ++++ +  + E+D +IVDS+DP+GPA  L    F+  + + L+  G++    ES +++  LI  +  + +E
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTISQALDDPRVEIMIGDGIKYVNE-HKNEFDVVIVDSTDPIGPAVGLFTSDFYKAVYECLKEDGIIVAQTESPFIYGKLINKLSKMFKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_THEP3 (Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 65/194 (33.51%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  232 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            SLKVKE L   K+ YQ + + ++  +G+VL LDGI+Q TEKDE  Y EMI H+PL +  +PK+V                                   SKKY P ++   +DPRV + IGD ++++ +  + E+D +IVDS+DP+GPA  L    F+  + + L+  G++    ES +++  LI  +  + +E
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTISQALDDPRVEIMIGDGIKYVNE-HKNEFDVVIVDSTDPIGPAVGLFTSDFYKAVYECLKEDGIIVAQTESPFIYGKLINKLSKMFKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE1_AQUAE (Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 68/189 (35.98%), Postives = 100/189 (52.91%), Query Frame = 1
Query:  229 HSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            H   V +IL++GKS YQE+ V ES  +G++L+LDG+VQL EK E  Y E +AH+PL + P+P+                                    VSKKY P L+VGF+DPR  +   D  ++++     E+D IIVDS+DPVG A  L  + FF  + KAL+  G+     ES+  H  ++ ++
Sbjct:   17 HCYTVSKILYQGKSPYQEIQVIESPEFGRMLILDGVVQLDEKYEFLYHEYLAHVPLHAHPNPRNVLIIGGGDGGTLREVLKHDIVERAVLVDIDKEVIEVSKKYLPTLSVGFQDPRAIVVNEDGYKYVQDY-ENEFDVIIVDSTDPVGFAHVLTTEDFFRHVYKALKEDGIFVAQTESIHYHLEMVSNI 204          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_MOUSE3.038e-4038.33Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV... [more]
SPEE_HUMAN6.768e-4037.89Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV... [more]
SPEE_LEPBP3.151e-2935.94Spermidine synthase OS=Leptospira biflexa serovar ... [more]
SPEE_LEPBA3.151e-2935.94Spermidine synthase OS=Leptospira biflexa serovar ... [more]
SPEE2_LEPIN2.043e-2833.84Spermidine synthase 2 OS=Leptospira interrogans GN... [more]
SPSY_YEAST4.550e-2832.75Spermine synthase OS=Saccharomyces cerevisiae GN=S... [more]
SPEE1_THETN6.571e-2734.54Spermidine synthase 1 OS=Thermoanaerobacter tengco... [more]
SPEE_THEPX1.912e-2633.51Spermidine synthase OS=Thermoanaerobacter sp. (str... [more]
SPEE_THEP31.912e-2633.51Spermidine synthase OS=Thermoanaerobacter pseudeth... [more]
SPEE1_AQUAE4.259e-2635.98Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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