FC931395

Overview
NameFC931395
Unique NameFC931395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ALKMQ (Spermidine synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=speE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 63/177 (35.59%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  232 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 657
            S KVKE LF  +SE+Q+V V ++  +GK++ LDG+V +TEKDE  Y +MI H+P+   P+ K V                                   ++ YFP ++   E+PRV L+  D V F++     +YD II+DS+DPVGP + L  + F+    KAL   G+L N  ES
Sbjct:   16 SFKVKEHLFSEQSEFQKVDVLDTYEFGKLMTLDGLVMVTEKDEFIYHDMIVHVPMAVNPNIKNVLIIGGGDGGTARELMRYQSIKHVDMVEIDKMVCDVARDYFPTISSELENPRVSLYYEDGVAFIKD-KENKYDLIIIDSTDPVGPGEGLFSQEFYTNCFKALTEQGILVNQNES 191          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CALS8 (Spermidine synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=speE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 62/201 (30.85%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            ++F     P    + K+ + ++  K++YQ++ + E+  +GK+LVLDG VQ T  DE  Y E+IAH+PL + P+PK V                                   SKKY PE++   +D R  + I D ++F+ +  +  +D IIVDS+DPVGPA  L E  F+  + + L+  G+     ES +    LI ++
Sbjct:    6 LWFTEQQTPDLGFTCKITKTIYTAKTKYQDLAILETKQFGKMLVLDGAVQTTIVDEFCYHELIAHVPLFTHPNPKKVAVIGGGDGGVIREILKHEEVEKAYLIEIDQEVIEASKKYLPEISCALDDKRAEVIITDGIKFVSE-NKNMFDVIIVDSTDPVGPAVGLFESNFYQAVYECLKEDGLFVAQTESPFYDQDLIRNV 205          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_HYDS0 (Spermidine synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=speE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 61/186 (32.80%), Postives = 97/186 (52.15%), Query Frame = 1
Query:  229 HSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLI 681
            H   + +IL++GKS+YQE+ V ES  +GK+L+LDG+VQ TEK+E  Y EM+ H  + +  +P+                                    VSKK+FP +A   +DPR  +   D  ++++   + E+D IIVDS+DPVG A  L  + FF  + +AL+  G+    +ES+  H  ++
Sbjct:   17 HCYGISKILYEGKSKYQEIQVVESHYFGKILILDGVVQFTEKNEFFYHEMLTHPVMFAHKNPQNVLIIGGGDGGILREVLKHKSVKKAVLVDIDKDVVEVSKKFFPTVACSMDDPRAIILNEDGFKYIQDY-KNEFDVIIVDSTDPVGFAHVLTTEEFFKYVFEALKEDGIYVGQSESLHYHLDIV 201          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTH (Spermidine synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=speE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 61/202 (30.20%), Postives = 103/202 (50.99%), Query Frame = 1
Query:  193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 693
            ++F     P    + K K+ L   K+EYQE+ V E+  +G++L+LDGI+Q T  DE  Y EMIAH+PL +  +PK                                    VSK+Y PE++   ++ +V + +GD ++++++  + E+D II+DS+DP+GPA+ L    F+  +   L+  G+     ES ++   LI  +I
Sbjct:    3 LWFTEYQTPTLGITCKTKKTLHSEKTEYQELAVIETEQFGRMLLLDGIIQTTVADEFVYHEMIAHVPLFTHKNPKKALVVGGGDGGSIREIVKHPSIEKAVLCEIDRRVIEVSKEYLPEISCALDNEKVEVVVGDGIKYVKE-HKNEFDVIIIDSTDPIGPAEGLFAIDFYRAVYDCLKEDGIFVAQTESPFIDKELITRII 203          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_DESAP (Spermidine synthase OS=Desulforudis audaxviator (strain MP104C) GN=speE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 64/198 (32.32%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLI 681
            ++F        A S +V E L    + +Q + V +++ +G+ LVLDGIVQ +  DE  Y EMI H+PL + P P+ V                                   SKKY PELA GF+ P+  + IGD ++++ +  +  +D +IVDS+DP+GPA  L    F+ +I +AL+  G+     ES + +T LI
Sbjct:    3 LWFTEKQNDNFAISYRVNETLHTETTPFQHLAVLDTVPFGRTLVLDGIVQTSVVDEYVYHEMITHVPLNTHPDPRRVLIVGGGDGGTLREVTKHPSVEKATLVEIDERVIAASKKYLPELACGFDSPKAEVVIGDGIKYVAEHKK-TFDLVIVDSTDPIGPAVGLFSLEFYRSIYEALKDEGLFVAQTESPYFNTDLI 199          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK5 (Spermidine synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=speE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 62/196 (31.63%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  226 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            A + K+KE L   K++YQE+ + ++ A G++LVLDGIVQ T KDE  Y EMI H+PL + P+P+ V                                    KKY PE++   ++P+  + IGD ++++ Q  R E+D IIVDS+DP G A+ L    F+  I   L   G+     E+ +    +++ +    +E
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVYECKKYLPEISCELDNPKCEVFIGDGIKYVHQ-HRNEFDVIIVDSTDPFGAAEGLFGGSFYKEIYNCLTEDGIFIAQTETPFYLPEVVKQVYKDAKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK1 (Spermidine synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=speE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 62/196 (31.63%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  226 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 708
            A + K+KE L   K++YQE+ + ++ A G++LVLDGIVQ T KDE  Y EMI H+PL + P+P+ V                                    KKY PE++   ++P+  + IGD ++++ Q  R E+D IIVDS+DP G A+ L    F+  I   L   G+     E+ +    +++ +    +E
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVYECKKYLPEISCELDNPKCEVFIGDGIKYVHQ-HRNEFDVIIVDSTDPFGAAEGLFGGSFYKEIYNCLTEDGIFIAQTETPFYLPEVVKQVYKDAKE 208          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_ANATD (Spermidine synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=speE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 59/201 (29.35%), Postives = 101/201 (50.25%), Query Frame = 1
Query:  193 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            ++F     P    + K+ + ++  K++YQ++ + E+  +G++LVLDG VQ T  DE  Y E+I+H+PL + P+PK V                                   SKKY PE++   +D R  + I D ++F+ +  +  +D IIVDS+DPVGPA  L +  F+  + + L+  G+     ES +    LI+++
Sbjct:    6 LWFTEQQTPDLGFTCKITKTIYTAKTQYQDLAILETKQFGRMLVLDGAVQTTIADEFCYHELISHVPLFTHPNPKKVAVIGGGDGGVIREILKHDEVEKAYLIEIDREVIEASKKYLPEISCALDDERAEVIITDGIKFVSE-NKNMFDVIIVDSTDPVGPAVGLFQDSFYKAVFECLKEDGLFVAQTESPFYDQDLIKNV 205          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_XANC5 (Spermidine synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=speE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 63/205 (30.73%), Postives = 97/205 (47.32%), Query Frame = 1
Query:  181 TGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV-----------------------------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 690
            T    Y  +    G A   ++   L + +S +Q++ ++++  +GK++++DG V LT +D   Y EMI+H  L + P+PK V                                   S+KYFPEL     D R  L   D V ++   P G  D +IVDS+DPVGPA+ L  K F+++  KAL+  G+L   +ES      LI +M
Sbjct:    3 TNDNWYIEHFQPTGSAIGFRISGKLDEVQSPFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKYFPELCDANHDARAELLFDDGVAYMANCPAGSVDIVIVDSTDPVGPAEGLFNKAFYESCFKALKDEGILVQQSESPLALLDLINEM 207          
BLAST of FC931395 vs. ExPASy Swiss-Prot
Match: SPEE_HALHL (Spermidine synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=speE PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 65/210 (30.95%), Postives = 96/210 (45.71%), Query Frame = 1
Query:  145 GWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVS-----------------------------------KKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGEYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLH 669
            GWF+E+                   G A SL + E + + +SEYQ + V+ +  +G++LVLDG V LTE+DE  Y EM+AH  L +   P+ V+                                   + +FP+L    +D R  L   D + ++R+      D +IVDS+DPVGPA  L  K F   +  AL PGG++   +ES  LH
Sbjct:    4 GWFTEAVEDE---------------GVAFSLAIDERVHEEQSEYQHIEVYRTRRWGRLLVLDGCVMLTERDEFLYHEMMAHPALFAHREPRRVAIVGGGDCGILREVLRHPGVEHTLQVELDERVTRVAETHFPDLCTANDDERAELRFTDGLRWIREAEPESLDVVIVDSTDPVGPAAGLFTKEFLTDVRSALGPGGIVVQQSESPLLH 198          
The following BLAST results are available for this feature:
BLAST of FC931395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SPEE_ALKMQ2.584e-2335.59Spermidine synthase OS=Alkaliphilus metalliredigen... [more]
SPEE_CALS84.407e-2330.85Spermidine synthase OS=Caldicellulosiruptor saccha... [more]
SPEE_HYDS05.756e-2332.80Spermidine synthase OS=Hydrogenobaculum sp. (strai... [more]
SPEE_CLOTH5.756e-2330.20Spermidine synthase OS=Clostridium thermocellum (s... [more]
SPEE_DESAP1.282e-2232.32Spermidine synthase OS=Desulforudis audaxviator (s... [more]
SPEE_CLOK52.187e-2231.63Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_CLOK12.187e-2231.63Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_ANATD2.857e-2229.35Spermidine synthase OS=Anaerocellum thermophilum (... [more]
SPEE_XANC56.364e-2230.73Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_HALHL8.312e-2230.95Spermidine synthase OS=Halorhodospira halophila (s... [more]

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Properties
Property NameValue
Genbank descriptionC34104F08EF PostHarvP1 Citrus clementina cDNA clone C34104F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931395 ID=FC931395; Name=FC931395; organism=Citrus clementina; type=EST; length=712bp
GGAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAA
GAATGGTTCAGCGGGGGCAATCCCTTCTTGTTGCTTGAAAGCAAGGGCTT
CAGCCCCAGAGCTTGATGCCAAATGCCACTCCACTGTTGTTTCTGGGTGG
TTTTCAGAATCTCAGTCTACCTCTGATAAAACTGGCAAAACAATGTACTT
CAACAATCCAATGTGGCCAGGAGAGGCCCATTCATTGAAAGTAAAAGAAA
TTTTATTCAAGGGAAAGTCTGAGTACCAAGAGGTCCTGGTTTTTGAGTCA
TTGGCATATGGGAAAGTGCTTGTTCTTGATGGAATTGTTCAACTAACGGA
GAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTT
CGATTCCATCTCCGAAAACCGTTTCTAAAAAGTATTTTCCTGAGCTAGCT
GTTGGTTTTGAGGATCCTCGTGTACGACTGCACATTGGTGATGCTGTTGA
ATTCCTACGGCAAGTGCCCAGAGGGGAATATGATGCAATTATTGTTGATT
CATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTT
GACACAATTGCTAAAGCATTAAGGCCTGGAGGTGTCCTCTGTAACATGGC
AGAAAGTATGTGGCTTCATACTCACCTTATTGAGGACATGATTTCTATTT
GTCGTGAAACAT
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