FC931402

Overview
NameFC931402
Unique NameFC931402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5289 contig Ccv1_Contig5289:31..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 66/221 (29.86%), Postives = 105/221 (47.51%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGA-VSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEA---GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            ++ R LG +GLR+SC+G G       FG+ +S+  A   +  A+  G+N FDT+  Y    +E+ LGK LK     R+ Y+V+TK    G+       S + +   +  SL RLQLDYVDI+  + ++  S  + +   +  +  Q  A   G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  GL
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWV---TFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPP----VCEQAEYHLFQREKVETQLPELYHKIGVGSMTWSPLACGL 284          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 63/218 (28.90%), Postives = 100/218 (45.87%), Query Frame = 2
Query:   95 LGNTGLRLSCVGFGASPLGNVFGAVS-ENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKCGRYVDGFDFSAE----------RVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLCMG 715
            LG+ GL +S  G G   +   +G    E D +  +  A   GI   DTS  YG   +E +LGKALK  G  R   +++TK G  V G +  AE           V  + + SL RL +D +D+   H ++     +I   T+  L+K  E GK+++IG++              P  AV +  S     +     E+++P  +  G+G+++ SPL  G
Sbjct:   13 LGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMIQLIHHAINSGITLLDTSDVYGPHTNEILLGKALK--GGTRERVVLATKFG-IVLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEI---TVGELKKLVEEGKLKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVE----EEIIPTCRELGIGIVAYSPLGRG 220          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: YI7E_SCHPO (Putative aryl-alcohol dehydrogenase C977.14c OS=Schizosaccharomyces pombe GN=SPAC977.14c PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 59/240 (24.58%), Postives = 107/240 (44.58%), Query Frame = 2
Query:   95 LGNTGLRLS-----CVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC----------------GRYVDGFD---------FSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYS--INDSTLEDLLPYLKSKGVGVISASPLCMGL 718
            LGN+GL++S     C+ +G       +    E +    ++ A+  GI  FDT+  Y   +SE+++GK ++   +PR+  ++ +KC                 R V   D          S + +  ++++S+ RL   Y+D+LQ H  +         E + AL    E+GK+R+IG + +    F  + +          +S  +Y   +      +++PY +  GVG+I  SPL  GL
Sbjct:   12 LGNSGLKVSKLILGCMSYGKKEYWEDWVLEDEEEVFKIMKAAYDAGIRTFDTANCYSAGVSEELVGKFIRKYEIPRSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFLDSPELANQCGLSRKHIFDAVEDSVKRLGT-YIDVLQIHRYD---PHVSAEEVMRALNDVVESGKVRYIGASTMRCYQFIELQNTAEKHGWHKFISMQNYHNLLYREEEREMIPYCQKTGVGLIPWSPLARGL 247          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 60/225 (26.67%), Postives = 106/225 (47.11%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGA-SPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFT------YMLDRVPPGAVDVILSYCHYSI--NDSTLEDLLPYLKSKGVGVISASPLCMGL 718
            ++ + LG +GLR+S + +GA    GN          + + R+A   G+NFFD +  Y    +E+++G+A++  G  R++ +VSTK    G+  +    S + +   +  SL RL +DYVD++ CH  +       V ET+ A+    + G   + G +    +  T        LD V P     I+    Y++        + LP   + G+G+ + SPL  G+
Sbjct:    1 MQYKNLGRSGLRVSQLSYGAWVTFGNQLDVKEAKALLQACRDA---GVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPD---ATTPVEETVRAMNWVIDHGMAFYWGTSEWSAQQITEAWSVANRLDLVGP-----IVEQPEYNLFSRHKVESEFLPLYSTYGLGLTTWSPLASGV 214          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: YRPG_BACSU (Uncharacterized oxidoreductase yrpG OS=Bacillus subtilis GN=yrpG PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 63/227 (27.75%), Postives = 105/227 (46.26%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYG----GTLSEKMLGKALKAAGVPRNEYIVSTKCGRYV--------DGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLP-LEIFTYMLDRVPPGAVDVILSYCHYSINDSTLE-DLLPYLKSKGVGVISASPLCMGL 718
            +E   LG TGLR+S +  G    G       E  A   + EA   GI FFDT+  YG      L+E ++GK     G  R + +++TK    +        D    S  ++ R ++ SL RLQ D++++ Q H I+  +     +E   A + Q  +GK+ +IG +      +     +      + ++     YS+ + T E ++LP  +  G+GV++ SPL  GL
Sbjct:    1 MEYTYLGRTGLRVSRLCLGTMNFGV---DTDEKTAFRIMDEALDNGIQFFDTANIYGWGKNAGLTESIIGKWFAQGGQRREKVVLATKVYEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQTDHIELYQMHHIDRRT---PWDEIWEAFETQVRSGKVDYIGSSNFAGWHLVKAQAEAEKRRFMGLVTEQHKYSLLERTAEMEVLPAARDLGLGVVAWSPLAGGL 221          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 63/221 (28.51%), Postives = 104/221 (47.06%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGA-VSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            ++ R LG +GLR+SC+G G       FG+ +S+  A   +  A+  G+N FDT+  Y    +E+ LG  LK+ G  R+ Y+++TK    G+       S + +   +  SL RLQL+YVDI+  +  +  S +++IV      + +      G  R+     +         + +PP    V     ++      +E  LP L  K GVG ++ SPL   L
Sbjct:   78 MKYRNLGKSGLRVSCLGLGTWV---TFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPP----VCEQAENHFFQREKVEMQLPELYHKIGVGSVTWSPLACSL 291          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 64/224 (28.57%), Postives = 102/224 (45.54%), Query Frame = 2
Query:   59 MAFPLRKLELRPLGNTGLRLSCVGFGASPLGNVFGAVS-ENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKCG-RYVDG---FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGVISASPLCMG 715
            MA  L  +    LG+ GL +S  G G   +   +G    E++ +  +  A   G+ F DTS  YG   +E +LGKAL+  G  R +  ++TK G  + DG          V  + + S  RL +D +D+   H I+       +  TI  L+K  E GKI++IG++              P  AV +  S      +    ED++P  +  G+G+++ SPL  G
Sbjct:    1 MAAALVSVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESEMIKLIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQ--GGVREKVELATKFGVSFADGKREIHGDPAYVRTACEGSFKRLGVDCIDLYYQHRID---KRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLW----SRDAEEDIIPTCRELGIGIVAYSPLGRG 215          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 65/234 (27.78%), Postives = 103/234 (44.02%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGA-VSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYC----------------HYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            ++ R LG +GLR+SC+G G       FG+ +S+  A   +  A+  G+N FDT+  Y    +E+ LG  LK+ G  R+ Y+++TK    G+       S + +   +  SL RLQL YVDI+              N + P    ++    + ++   GL L   T        GA +++ +Y                 H+      +E  LP L  K GVG ++  PL  GL
Sbjct:   78 MKYRNLGKSGLRVSCLGLGTWV---TFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVDIV------------FANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRW-----GAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLACGL 291          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 66/228 (28.95%), Postives = 108/228 (47.37%), Query Frame = 2
Query:   68 PLRKLEL-RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT-GLPLEIF-TYMLDR----VPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            P R+L+  R LG +GLR+SC+G G        G +++  A   +  A+  GIN FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQLDYVD++  +  +    +  + ET+ A+      G   + G +    +EI   Y + R    +PP    +     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   32 PKRQLQFYRNLGKSGLRVSCLGLGTWVTFG--GQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPD---PNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPP----ICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGI 250          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 58/220 (26.36%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            ++ R LG +GLR+SC+G G        G +S+  A   +  A+  G+N FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +  + +++IV      + +      G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFG--GQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPP----VCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGI 284          
The following BLAST results are available for this feature:
BLAST of FC931402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
KCAB3_XENLA5.488e-1329.86Voltage-gated potassium channel subunit beta-3 OS=... [more]
A115_TOBAC9.361e-1328.90Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
YI7E_SCHPO1.597e-1224.58Putative aryl-alcohol dehydrogenase C977.14c OS=Sc... [more]
KCAB_ORYSJ2.085e-1226.67Probable voltage-gated potassium channel subunit b... [more]
YRPG_BACSU2.724e-1227.75Uncharacterized oxidoreductase yrpG OS=Bacillus su... [more]
KCAB3_RAT4.646e-1228.51Voltage-gated potassium channel subunit beta-3 OS=... [more]
IN22_MAIZE6.068e-1228.57IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
KCAB3_HUMAN1.035e-1127.78Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB2_XENLA2.306e-1128.95Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT3.011e-1126.36Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34104G03EF PostHarvP1 Citrus clementina cDNA clone C34104G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931402 ID=FC931402; Name=FC931402; organism=Citrus clementina; type=EST; length=720bp
GCTCACAAAATTTTTCCCACTTCCCAAACGCCTCTCAGAAGCCCTAAACT
TAATTCAAATGGCATTCCCACTTCGCAAATTAGAGCTCCGACCATTGGGC
AACACGGGCCTCCGCCTCAGTTGCGTCGGCTTCGGCGCCTCGCCGCTCGG
CAACGTTTTTGGGGCCGTCTCTGAAAACGACGCCGTTGCCTCCGTCCGCG
AAGCATTTCGCCTTGGCATCAACTTCTTTGACACTTCTCCATATTATGGA
GGGACATTGTCTGAGAAGATGCTTGGTAAGGCACTGAAAGCTGCGGGCGT
TCCGAGAAATGAGTATATTGTGTCAACAAAATGCGGGCGGTATGTTGACG
GTTTTGATTTTAGTGCTGAGAGAGTGACTAGGAGCATTGATGAGAGCTTG
GCGAGGTTGCAGCTTGATTACGTCGATATACTGCAGTGCCATGACATTGA
ATTTGGGTCTCTTGACCAGATTGTGAATGAGACCATTCCTGCCCTTCAGA
AGCAGAAGGAAGCAGGGAAAATCCGTTTCATTGGTATTACCGGACTTCCC
TTGGAAATTTTTACCTACATGCTTGATCGGGTGCCACCTGGTGCAGTTGA
TGTAATTCTTTCGTACTGCCATTACAGTATTAATGATTCAACATTGGAGG
ATTTACTGCCTTACTTGAAGAGCAAGGGTGTAGGCGTCATTAGTGCTTCC
CCTCTTTGCATGGGGCTTCT
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