FC931402

Overview
NameFC931402
Unique NameFC931402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5289 contig Ccv1_Contig5289:31..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 58/220 (26.36%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            ++ R LG +GLR+SC+G G        G +S+  A   +  A+  G+N FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +  + +++IV      + +      G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFG--GQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPP----VCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGI 284          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 59/220 (26.82%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            ++ R LG +GLR+SC+G G        G +S+  A   +  A+  G+N FDT+  Y    +E +LG  LK  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +  + +++IV      + +      G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFG--GQISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPP----VCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGI 284          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 58/220 (26.36%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   80 LELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            ++ R LG +GLR+SC+G G        G +S+  A   +  A+  G+N FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +  + +++IV      + +      G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFG--GQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPP----VCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGI 284          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 58/217 (26.73%), Postives = 100/217 (46.08%), Query Frame = 2
Query:   89 RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            R LG +GLR+SC+G G        G +S+  A   +  A+  G+N FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +  + +++IV      + +      G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   92 RNLGKSGLRVSCLGLGTWVTFG--GQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPP----VCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGI 302          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 58/217 (26.73%), Postives = 100/217 (46.08%), Query Frame = 2
Query:   89 RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            R LG +GLR+SC+G G        G +S+  A   +  A+  G+N FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +  + +++IV      + +      G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   81 RNLGKSGLRVSCLGLGTWVTFG--GQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPP----VCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGI 291          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 58/217 (26.73%), Postives = 100/217 (46.08%), Query Frame = 2
Query:   89 RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGS-LDQIVNETIPALQKQKEA--GKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            R LG +GLR+SC+G G        G +S+  A   +  A+  G+N FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +  + +++IV      + +      G  R+  +  +         + +PP    V     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   92 RNLGKSGLRVSCLGLGTWVTFG--GQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPP----VCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGI 302          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 61/226 (26.99%), Postives = 103/226 (45.58%), Query Frame = 2
Query:   59 MAFPLRKLELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKCGRYVD------GFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLE-DLLPYLKSKGVGVISASPLCMG 715
            M+ P RK+     GN    +  +GFG   L  ++G  SE    A +  A  LG  F+D+S  YG   +E+ +G+  K  G  R E  ++TK G   +        +   + + +++D SL RL +D +D+   H     S +  + + + AL+K  EAGKIR+IG++              P  AV V   Y  +S+     E  ++   +   + ++  +PL  G
Sbjct:    1 MSIPTRKI-----GND--TVPAIGFGCMGLHAMYGPSSEEANQAVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQTG-RRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRF---SGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSAVQV--EYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRG 213          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 65/228 (28.51%), Postives = 108/228 (47.37%), Query Frame = 2
Query:   68 PLRKLEL-RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT-GLPLEIF-TYMLDR----VPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            P R+L+  R LG +GLR+SC+G G        G +++  A   +  A+  GIN FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +    +  + ET+ A+      G   + G +    +EI   Y + R    +PP    +     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   32 PKRQLQFYRNLGKSGLRVSCLGLGTWVTFG--GQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPD---PNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPP----ICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGI 250          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 65/228 (28.51%), Postives = 108/228 (47.37%), Query Frame = 2
Query:   68 PLRKLEL-RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT-GLPLEIF-TYMLDR----VPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            P R+L+  R LG +GLR+SC+G G        G +++  A   +  A+  GIN FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +    +  + ET+ A+      G   + G +    +EI   Y + R    +PP    +     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   32 PKRQLQFYRNLGKSGLRVSCLGLGTWVTFG--GQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPD---PNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPP----ICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGI 250          
BLAST of FC931402 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 65/228 (28.51%), Postives = 108/228 (47.37%), Query Frame = 2
Query:   68 PLRKLEL-RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKALKAAGVPRNEYIVSTKC---GRYVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGIT-GLPLEIF-TYMLDR----VPPGAVDVILSYCHYSINDSTLEDLLPYLKSK-GVGVISASPLCMGL 718
            P R+L+  R LG +GLR+SC+G G        G +++  A   +  A+  GIN FDT+  Y    +E +LG  +K  G  R+  +++TK    G+       S + +   +  SL RLQL+YVD++  +  +    +  + ET+ A+      G   + G +    +EI   Y + R    +PP    +     ++      +E  LP L  K GVG ++ SPL  G+
Sbjct:   32 PKRQLQFYRNLGKSGLRVSCLGLGTWVTFG--GQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPD---PNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPP----ICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGI 250          
The following BLAST results are available for this feature:
BLAST of FC931402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
KCAB1_MOUSE3.011e-1126.36Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_CHICK3.011e-1126.82Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN3.011e-1126.36Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT5.136e-1126.73Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU5.136e-1126.73Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN5.136e-1126.73Voltage-gated potassium channel subunit beta-1 OS=... [more]
YAKC_SCHPO6.708e-1126.99Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
KCAB2_BOVIN6.708e-1128.51Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT8.761e-1128.51Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE8.761e-1128.51Voltage-gated potassium channel subunit beta-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34104G03EF PostHarvP1 Citrus clementina cDNA clone C34104G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931402 ID=FC931402; Name=FC931402; organism=Citrus clementina; type=EST; length=720bp
GCTCACAAAATTTTTCCCACTTCCCAAACGCCTCTCAGAAGCCCTAAACT
TAATTCAAATGGCATTCCCACTTCGCAAATTAGAGCTCCGACCATTGGGC
AACACGGGCCTCCGCCTCAGTTGCGTCGGCTTCGGCGCCTCGCCGCTCGG
CAACGTTTTTGGGGCCGTCTCTGAAAACGACGCCGTTGCCTCCGTCCGCG
AAGCATTTCGCCTTGGCATCAACTTCTTTGACACTTCTCCATATTATGGA
GGGACATTGTCTGAGAAGATGCTTGGTAAGGCACTGAAAGCTGCGGGCGT
TCCGAGAAATGAGTATATTGTGTCAACAAAATGCGGGCGGTATGTTGACG
GTTTTGATTTTAGTGCTGAGAGAGTGACTAGGAGCATTGATGAGAGCTTG
GCGAGGTTGCAGCTTGATTACGTCGATATACTGCAGTGCCATGACATTGA
ATTTGGGTCTCTTGACCAGATTGTGAATGAGACCATTCCTGCCCTTCAGA
AGCAGAAGGAAGCAGGGAAAATCCGTTTCATTGGTATTACCGGACTTCCC
TTGGAAATTTTTACCTACATGCTTGATCGGGTGCCACCTGGTGCAGTTGA
TGTAATTCTTTCGTACTGCCATTACAGTATTAATGATTCAACATTGGAGG
ATTTACTGCCTTACTTGAAGAGCAAGGGTGTAGGCGTCATTAGTGCTTCC
CCTCTTTGCATGGGGCTTCT
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