FC931404

Overview
NameFC931404
Unique NameFC931404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length261
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.292e-26
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E P+FDK   V YMK++IK LTP L  E+ E+ + NI+GATK+LLSKLSDLQFFVGESM DD  +VFAYYK+GATDPTF
Sbjct:   72 DTFRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTF 156          
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.292e-26
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E P +DK   + Y+K++IKLLTP LSEE   + +K IEGATKFLL +LSD QFFVGE MHDD  LVFAYYKEG+T+PTF
Sbjct:   72 DTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTF 156          
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.412e-26
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E P +DK   + Y+K++IKLLTP L+ E+ E  +K IEGATKFLL KL D QFFVGE MHDD  +VFAYYKEGAT+PTF
Sbjct:   72 DTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTF 156          
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.374e-26
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E P FDK   + ++KR+IK L   LSEER    +KN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTF
Sbjct:   71 DTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTF 155          
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.374e-26
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E PAFDK   + Y+KR+IK LT  L  E  +  +KN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYY+EGA DPTF
Sbjct:   72 DTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTF 156          
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.437e-25
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E PAFDK   +++MKR+IK L+  L  +  ++ +KN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYYKEGA DPTF
Sbjct:   72 DTFRLQEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTF 156          
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.337e-23
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E P FDK + V+Y+K++IK LT +L  E+ +  +K +EGATKFLLSKL DLQFFVGESM DD  + FAYYK+GAT+ TF
Sbjct:   71 DTFRLQEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTF 155          
BLAST of FC931404 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.081e-23
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 2
Query:    5 DSFMLHELPAFDKNALVTYMKRFIKLLTPILSEERPEISEKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 259
            D+F L E P+ DK   ++ +K++IK LTP+L  E+ E  +  IEGA K+LL K+ DLQFFVGESM DD  +VFAYYKEGATDPTF
Sbjct:   72 DTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTF 156          
The following BLAST results are available for this feature:
BLAST of FC931404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_TOBAC1.292e-2667.06Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH1.292e-2664.71Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL6.412e-2663.53Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ8.374e-2665.88Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU8.374e-2664.71Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT2.437e-2563.53Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE1.337e-2360.00Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME5.081e-2358.82Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC34104G05EF PostHarvP1 Citrus clementina cDNA clone C34104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931404 ID=FC931404; Name=FC931404; organism=Citrus clementina; type=EST; length=261bp
TGCCGACTCATTCATGCTACACGAGCTACCCGCTTTTGACAAGAATGCGC
TTGTAACATACATGAAGAGATTCATCAAGTTGCTGACGCCCATACTGAGC
GAGGAGAGGCCGGAGATTTCTGAGAAGAATATTGAGGGAGCGACCAAGTT
CTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGC
ATGATGATGGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGACCGAC
CCAACATTTTT
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