FC931412

Overview
NameFC931412
Unique NameFC931412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15297 contig Ccv1_Contig15297:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 69/247 (27.94%), Postives = 111/247 (44.94%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM--TSGEAVKYSSSLDAAR 736
            GGV+ AVS+T  +P+ER+K+L Q     L+Q     K  GI    +     EG +  ++GN  NVIR  P  A+ F   + YK+      D+     +                   Y LD  R+RL      +K      +NG+ D  +  +  +G+AGLY+G   S LG+  Y  + F  Y+++K   +      + + S   G      A   +YP+D +RRR+ +    G+ + Y+ + DA R
Sbjct:  145 GGVAGAVSRTCTSPLERLKILNQVGHMNLEQNAPKYKGRGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLTTY--ENLFVGGAAGVTSLLCTYPLDLIRSRLTVQVFGNK------YNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDAFR 383          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 72/244 (29.51%), Postives = 108/244 (44.26%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFR---RTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL--VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKYSS 718
            G ++ AV+KTA AP++R K++ Q     +   R   K     + +R   RT   EG +SLWRGN+A ++R  P  A+ F   + YK +        G A   +                 Y LD  R R+A   K         ++ ++ V+ +    +G+  LYRGF P+VLG++ Y G+ F  Y+++K +     G  +       L G         ASYPLD VRRRM         Y S
Sbjct:   43 GALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSAK-----EAYRLIYRTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATIITYPLDLVRARMAVTPKE-------MYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYPFERLLFGACAGLFGQSASYPLDVVRRRMQTAGVTGHAYGS 269          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 70/244 (28.69%), Postives = 108/244 (44.26%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFR---RTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL--VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKYSS 718
            G ++ AV+KTA AP++R K++ Q     +   R   K     + +R   RT   +G +SLWRGN+A ++R  P  A+ F   + YK +        G A   +                 Y LD  R R+A   K         ++ ++ V+ +    +G+  LYRGF P+VLG++ Y G+ F  Y+++K +     G  +       L G         +SYPLD VRRRM         Y S
Sbjct:   43 GALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSAK-----EAYRLIYRTYMNDGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATLLTYPLDLVRARMAVTQKE-------MYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYTFERLLFGACAGLFGQSSSYPLDVVRRRMQTAGVTGHTYGS 269          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 74/250 (29.60%), Postives = 108/250 (43.20%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFR---RTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL--VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKYSSSLDAAR 736
            G  + AV+KTA AP++R K++ Q     +   R   K     + +R   RT   +G  SLWRGN+A ++R  P  A+ F   + YK +        G A   +                 Y LD  R R+A   K         ++ ++DV+ +    +G+  LYRGF P++LG+V Y GL F  Y+++K       G          + G         ASYPLD VRRRM         YS+ L   R
Sbjct:   42 GAFAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSAK-----EAYRLIYRTYLKDGFFSLWRGNSATMVRVIPYAAIQFCAHEQYKGILGKYYGFQGKALPPVPRLLAGSLAGTTAAIITYPLDMVRARMAVTPKE-------MYSNIMDVFVRISREEGLKTLYRGFTPTILGVVPYAGLSFFTYETLKKTHAEKTGRAHPFPYERLVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHTYSTVLGTMR 274          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 68/231 (29.44%), Postives = 112/231 (48.48%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GG++ AVS+T+ AP++R+K+++Q        G    K N I   FR+     G+ SLWRGN  NVI+  P  A+ F   + YK +   +  + G  +  +               F+Y ++  +TRLA            Q++G+ D  +K L  +G+   Y+G+ P++LGI+ Y G+   +Y+ +K   L    + S     ++    G   +T   +ASYPL  VR RM
Sbjct:  201 GGIAGAVSRTSTAPLDRLKIMMQ------VHGSKSDKMN-IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISGSMAGATAQT----FIYPMEVMKTRLAVGKTG-------QYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRM 413          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: EAAC_ARATH (Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.286e-20
Identity = 76/232 (32.76%), Postives = 107/232 (46.12%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLLGWTVTTGAGVAS---YPLDTVRRRMMM 688
            G ++ A +KT  AP++RIKLL+Q     L Q +  +K  G  +     A  EGV   W+GN   VIR  P  A+     ++YK++F  K D+      ++                 Y LD  R RLA          E ++  +  V    L  +GIA  Y G GPS++GI  Y  + F ++D +K  L   P E    A   L  T    AG+A+   YPLDTVRR+M M
Sbjct:   94 GALAGAAAKTVTAPLDRIKLLMQTHGIRLGQ-QSAKKAIGFIEAITLIAKEEGVKGYWKGNLPQVIRVLPYSAVQLLAYESYKNLFKGKDDQLS----VIGRLAAGACAGMTSTLLTYPLDVLRLRLA---------VEPRYRTMSQVALSMLRDEGIASFYYGLGPSLVGIAPYIAVNFCIFDLVKKSL---PEEYRKKAQSSL-LTAVLSAGIATLTCYPLDTVRRQMQM 307          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 64/231 (27.71%), Postives = 111/231 (48.05%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GG++ AVS+T  AP++R+K+++Q            +  + I    ++     G+ SLWRGN  NVI+  P  A+ F   + YK +F  +  + G A+  +                +Y ++  +TRLA            Q++G+ D  +K +  +GI   Y+G+ P++LGI+ Y G+   +Y+++K   L    + S     L+    G   +T   +ASYPL  +R RM
Sbjct:  201 GGMAGAVSRTGTAPLDRLKVMMQVHGS--------KGNSNIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTS----IYPMEVLKTRLAVGRTG-------QYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLVLLGCGTASSTCGQLASYPLALIRTRM 412          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 65/231 (28.14%), Postives = 111/231 (48.05%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GG++ AVS+T  AP++R+K+++Q            +  + I    ++     GV SLWRGN  NVI+  P  A+ F   + YK +F  +  + G A+  +                +Y ++  +TRLA            Q++G+ D  +K +  +GI   Y+G+ P++LGI+ Y G+   +Y+++K   L    + S     L+    G   +T   +ASYPL  +R RM
Sbjct:  201 GGMAGAVSRTGTAPLDRLKVMMQVHGT--------KGNSNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS----IYPMEVLKTRLAVGKTG-------QYSGMFDCAKKIMQKEGILAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNYAKDSANPGVLVLLGCGTVSSTCGQLASYPLALIRTRM 412          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.411e-19
Identity = 70/244 (28.69%), Postives = 106/244 (43.44%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASD-GIAGLYRGFGPSVLGIVVYRGLYFGMYDSIK-------PVLLVGP-------LEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GG++   +KT  AP++R+K+L+Q  +   K       + G+    R     EG + L++GN A +IR FP  A+ F   + YK++   K    G+   +M                 Y LD  R RLA   K     GE  + G++  ++   A + G  G YRG  P++LG+  Y G+ F  + ++K       P LL  P       L      + L G      A   SYP D  RRRM +
Sbjct:   43 GGIAGCCAKTTVAPLDRVKVLLQAHNHHYK-------HLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVIC----TYPLDMVRVRLAFQVK-----GEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQL 270          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GG++ AVS+T+ AP++R+K+++Q             K   I   FR+     GV SLWRGN  NVI+  P  A+ F   + YK +   +  + G  +  +               F+Y ++  +TRLA            Q++G+ D  +K L  +G    Y+G+ P++LGI+ Y G+   +Y+ +K   L    + S     L+    G   +T   +ASYPL  VR RM
Sbjct:  201 GGIAGAVSRTSTAPLDRLKVMMQVHGS---------KSMNIFGGFRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISGSMAGATAQT----FIYPMEVMKTRLAVGKTG-------QYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQLASYPLALVRTRM 411          
The following BLAST results are available for this feature:
BLAST of FC931412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
MCFB_DICDI4.694e-2327.94Mitochondrial substrate carrier family protein B O... [more]
S2542_XENTR1.156e-2129.51Solute carrier family 25 member 42 OS=Xenopus trop... [more]
S2542_XENLA3.364e-2128.69Solute carrier family 25 member 42 OS=Xenopus laev... [more]
S2542_DANRE5.738e-2129.60Solute carrier family 25 member 42 OS=Danio rerio ... [more]
SCMC1_HUMAN6.344e-2029.44Calcium-binding mitochondrial carrier protein SCaM... [more]
EAAC_ARATH8.286e-2032.76Probable envelope ADP,ATP carrier protein, chlorop... [more]
SCM1B_XENLA1.082e-1927.71Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA1.413e-1928.14Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_HUMAN2.411e-1928.69Graves disease carrier protein OS=Homo sapiens GN=... [more]
SCMC1_RABIT3.149e-1929.44Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC34104H01EF PostHarvP1 Citrus clementina cDNA clone C34104H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931412 ID=FC931412; Name=FC931412; organism=Citrus clementina; type=EST; length=736bp
GGGTGGTGTCTCCGCCGCTGTCTCTAAGACCGCTGCTGCCCCCATTGAGC
GTATCAAGCTCCTGATCCAGAACCAGGATGAGATGCTCAAGCAGGGTCGC
CTCGACCGCAAGTACAACGGTATTGCTGACTGCTTCCGCCGTACCGCCGC
CGCTGAGGGTGTTGTCTCCTTGTGGCGTGGTAACACCGCCAACGTCATCC
GTTACTTCCCCACTCAGGCCCTGAACTTCGCTTTCCGCGACACCTACAAG
TCCATGTTCGCCTACAAGAAGGACCGTGATGGATACGCCAAGTGGATGAT
GGGTAACCTTGCCTCCGGTGGTGCCGCCGGTGCCACTTCCCTCCTGTTCG
TCTACTCCCTGGACTACGCCCGTACCCGTCTGGCCAACGATGCCAAGTCC
TCCAAGGGCTCCGGTGAGCGCCAGTTCAACGGTCTCGTCGATGTTTACCG
CAAGACCCTCGCCTCCGACGGTATTGCCGGTCTCTACCGTGGCTTCGGTC
CCTCCGTTCTCGGAATTGTCGTCTACCGTGGTCTCTACTTCGGAATGTAC
GATTCCATCAAGCCCGTCCTCCTCGTTGGTCCTCTTGAGGGCTCTTTCCT
CGCCTCCTTCCTGCTCGGCTGGACCGTCACCACCGGTGCCGGTGTTGCCT
CTTACCCTCTTGACACCGTTCGCCGTCGCATGATGATGACCTCTGGTGAG
GCCGTCAAGTACTCCAGCTCCCTGGATGCTGCCCGC
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