FC931412

Overview
NameFC931412
Unique NameFC931412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15297 contig Ccv1_Contig15297:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 67/231 (29.00%), Postives = 112/231 (48.48%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GGV+ AVS+T  AP++R+K+ +Q       +  L    NG    F++     GV SLWRGN  NVI+  P  A+ F   + YK + +    +DG                      +Y ++  +TRL     + + +G  Q++G+ D  +K L  +G+   Y+G+ P++LGI+ Y G+   +Y+++K   L    + +     L+    G   +T   +ASYPL  +R RM
Sbjct:  202 GGVAGAVSRTGTAPLDRMKVFMQVHSSKTNKISL---VNG----FKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLS----KDGGKVQSHERFMAGSLAGATAQTAIYPMEVMKTRL-----TLRKTG--QYSGMFDCAKKILRKEGVKAFYKGYVPNILGIIPYAGIDLAVYETLKNTWLSHYAKDTANPGVLVLLGCGTISSTCGQLASYPLALIRTRM 414          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 68/231 (29.44%), Postives = 112/231 (48.48%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GGV+ AVS+T+ AP++R+K+++Q        G    K N I   F++     G+ SLWRGN  NVI+  P  A+ F   + YK +   +  + G  +  +               F+Y ++  +TRLA            Q++G+ D  +K L  +G+   Y+G+ P++LGI+ Y G+   +Y+ +K   L    + S     ++    G   +T   +ASYPL  VR RM
Sbjct:  201 GGVAGAVSRTSTAPLDRLKVMMQ------VHGSKSAKMN-IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSGSMAGATAQT----FIYPMEVLKTRLAVGKTG-------QYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRM 413          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: GDC_MOUSE (Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 70/244 (28.69%), Postives = 106/244 (43.44%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASD-GIAGLYRGFGPSVLGIVVYRGLYFGMYDSIK-------PVLLVGP-------LEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GG++   +KT  AP++R+K+L+Q  +   K       + G+    R     EG + L++GN A +IR FP  A+ F   + YK+    K    G+   +M                 Y LD  R RLA   K     GE  ++G++  ++   A + G  G YRG  P++LG+  Y G+ F  + ++K       P LL  P       L      + L G      A   SYP D  RRRM +
Sbjct:   43 GGIAGCCAKTTVAPLDRVKVLLQAHNRHYK-------HLGVLSTLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGMTAVIC----TYPLDVVRVRLAFQVK-----GEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPALLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYPFDVTRRRMQL 270          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 63/231 (27.27%), Postives = 109/231 (47.19%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GG++ AVS+T  AP++R+K+++Q            +    I    ++     G+ SLWRGN  NVI+  P  A+ F   + YK +F  +  + G A+  +                +Y ++  +TRLA            Q++G+ D  +K +  +G+   Y+G+ P++LGI+ Y G+   +Y+++K   L      S     L+    G   +T   +ASYPL  +R RM
Sbjct:  201 GGMAGAVSRTGTAPLDRLKVMMQVHGS--------KGNANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS----IYPMEVLKTRLAVGKTG-------QYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLKTFWLQNYATDSANPGVLVLLGCGTASSTCGQLASYPLALIRTRM 412          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2542_RAT (Solute carrier family 25 member 42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 71/250 (28.40%), Postives = 108/250 (43.20%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRR---TAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPV--LLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKYSSSLDAAR 736
            G ++ A++KTA AP++R K++ Q          +  K     + FR    T   EG +SLWRGN+A ++R  P  A+ F+  + YK +  +     G A                     Y LD  R R+A   K         ++ +  V+ +    +G+  LY GF P+VLG++ Y GL F  Y+S+K +     G  +       + G         ASYPLD VRRRM        ++ S L   R
Sbjct:   40 GALAGALAKTAVAPLDRTKIIFQ----------VSSKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVRARMAVTPKE-------MYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHQHGSILSTLR 272          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2542_MOUSE (Solute carrier family 25 member 42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 71/250 (28.40%), Postives = 108/250 (43.20%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRR---TAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPV--LLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKYSSSLDAAR 736
            G ++ A++KTA AP++R K++ Q          +  K     + FR    T   EG +SLWRGN+A ++R  P  A+ F+  + YK +  +     G A                     Y LD  R R+A   K         ++ +  V+ +    +G+  LY GF P+VLG++ Y GL F  Y+S+K +     G  +       + G         ASYPLD VRRRM        ++ S L   R
Sbjct:   40 GALAGALAKTAVAPLDRTKIIFQ----------VSSKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVRARMAVTPKE-------MYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHQHGSILSTLR 272          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 69/244 (28.28%), Postives = 106/244 (43.44%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASD-GIAGLYRGFGPSVLGIVVYRGLYFGMYDSIK-------PVLLVGP-------LEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            GG++   +KT  AP++R+K+L+Q  +   +       + G+    R     EG + L++GN A +IR FP  A+ F   + YK++   K    G+   +M                 Y LD  R RLA   K     GE  + G++  ++   A + G  G YRG  P++LG+  Y G+ F  + ++K       P LL  P       L      + L G      A   SYP D  RRRM +
Sbjct:   41 GGIAGCCAKTTVAPLDRVKVLLQAHNHHYR-------HLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGVSGHVHRLMAGSMAGMTAVIC----TYPLDMVRVRLAFQVK-----GEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYPFDVTRRRMQL 268          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 68/231 (29.44%), Postives = 108/231 (46.75%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            GGV+ AVS+T+ AP++R+K+++Q             K   I   FR+     G+ SLWRGN  NVI+  P  A+ F   + YK +       +G                     F+Y ++  +TRLA  AK+       Q++G+    +K L  +G    Y+G+ P++LGI+ Y G+   +Y+ +K   L    + S     ++    G   +T   +ASYPL  VR RM
Sbjct:  201 GGVAGAVSRTSTAPLDRLKVMMQVHGS---------KSMNIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLT----EEGQKLGTFERFISGSMAGATAQTFIYPMEVLKTRLAV-AKTG------QYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQLASYPLALVRTRM 411          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: MCFP_DICDI (Mitochondrial substrate carrier family protein P OS=Dictyostelium discoideum GN=mcfP PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 61/233 (26.18%), Postives = 100/233 (42.92%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLV------GPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG++   +K+A AP+ER+K+L Q + E+          N +     +    EG+  LWRGN+A ++R FP  A+ F   +T K+     K                           Y LD  R RLA +                 + + T   DG+ G+YRG  P+++GI+ Y G+ F  ++ +K +  +      G + G++    + G      A   +YP D VRRR+
Sbjct:   21 GGLAGVTAKSAVAPLERVKILYQIKSELYS-------LNSVYGSMLKIVENEGIKGLWRGNSATILRVFPYAAVQFLSYETIKNHLVADKSSS------FQIFLAGSAAGGIAVCATYPLDLLRARLAIEIHKKPTKPHH-------LLKSTFTKDGVKGIYRGIQPTLIGILPYGGISFSTFEFLKRIAPLNEIDENGQISGTY--KLIAGGIAGGVAQTVAYPFDVVRRRV 231          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.755e-18
Identity = 66/232 (28.45%), Postives = 111/232 (47.84%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYN-GIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG + AVS+T  AP++R+K+L+Q            R  N GI   F +     G  SLWRGN  NV++  P  A+ F   +  K +    ++     + ++                +Y ++  +TR+A      + +G  Q++G++D  R+ LA +G+A  Y+G+ P++LGI+ Y G+   +Y+++K   L    V   +         G   +T   +ASYPL  VR RM
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVH--------ASRSNNMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIAQSS----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRM 405          
The following BLAST results are available for this feature:
BLAST of FC931412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SCMC1_DANRE3.149e-1929.00Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN4.112e-1929.44Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_MOUSE4.112e-1928.69Graves disease carrier protein homolog OS=Mus musc... [more]
SCMC1_XENTR7.014e-1927.27Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_RAT9.161e-1928.40Solute carrier family 25 member 42 OS=Rattus norve... [more]
S2542_MOUSE9.161e-1928.40Solute carrier family 25 member 42 OS=Mus musculus... [more]
GDC_BOVIN9.161e-1928.28Graves disease carrier protein OS=Bos taurus GN=SL... [more]
SCMC1_MOUSE1.196e-1829.44Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFP_DICDI5.938e-1826.18Mitochondrial substrate carrier family protein P O... [more]
SCMC2_HUMAN7.755e-1828.45Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC34104H01EF PostHarvP1 Citrus clementina cDNA clone C34104H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931412 ID=FC931412; Name=FC931412; organism=Citrus clementina; type=EST; length=736bp
GGGTGGTGTCTCCGCCGCTGTCTCTAAGACCGCTGCTGCCCCCATTGAGC
GTATCAAGCTCCTGATCCAGAACCAGGATGAGATGCTCAAGCAGGGTCGC
CTCGACCGCAAGTACAACGGTATTGCTGACTGCTTCCGCCGTACCGCCGC
CGCTGAGGGTGTTGTCTCCTTGTGGCGTGGTAACACCGCCAACGTCATCC
GTTACTTCCCCACTCAGGCCCTGAACTTCGCTTTCCGCGACACCTACAAG
TCCATGTTCGCCTACAAGAAGGACCGTGATGGATACGCCAAGTGGATGAT
GGGTAACCTTGCCTCCGGTGGTGCCGCCGGTGCCACTTCCCTCCTGTTCG
TCTACTCCCTGGACTACGCCCGTACCCGTCTGGCCAACGATGCCAAGTCC
TCCAAGGGCTCCGGTGAGCGCCAGTTCAACGGTCTCGTCGATGTTTACCG
CAAGACCCTCGCCTCCGACGGTATTGCCGGTCTCTACCGTGGCTTCGGTC
CCTCCGTTCTCGGAATTGTCGTCTACCGTGGTCTCTACTTCGGAATGTAC
GATTCCATCAAGCCCGTCCTCCTCGTTGGTCCTCTTGAGGGCTCTTTCCT
CGCCTCCTTCCTGCTCGGCTGGACCGTCACCACCGGTGCCGGTGTTGCCT
CTTACCCTCTTGACACCGTTCGCCGTCGCATGATGATGACCTCTGGTGAG
GCCGTCAAGTACTCCAGCTCCCTGGATGCTGCCCGC
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