FC931412

Overview
NameFC931412
Unique NameFC931412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15297 contig Ccv1_Contig15297:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.755e-18
Identity = 68/246 (27.64%), Postives = 109/246 (44.31%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKYSSSLD 727
            GG + AVS+T  AP +RIK+ +Q      K  RL     G+  C +   A  G+ S WRGN  NVI+  P  A+ F   D  K +   KK  +  + +                  +Y ++  +TRLA      + +G+    G++    K    +GI   Y+G+ P+++GI+ Y G+   +Y+++K   +        E   LA    G   +T   ++SYP   VR R+   S    +YS   D
Sbjct:  255 GGAAGAVSRTCTAPFDRIKVYLQVNSS--KTNRL-----GVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEISTF--ERLCAGSAAGAISQSTIYPMEVMKTRLA-----LRKTGQLD-RGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGIDLAIYETLKRTYVRYYETNSSEPGVLALLACGTCSSTCGQLSSYPFALVRTRLQALS--ITRYSPQPD 483          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: S2542_HUMAN (Solute carrier family 25 member 42 OS=Homo sapiens GN=SLC25A42 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 67/232 (28.88%), Postives = 102/232 (43.97%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFR---RTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPV--LLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            G ++ A++KTA AP++R K++ Q          +  K     + FR    T   EG +SLWRGN+A ++R  P  A+ F+  + YK +        G A                     Y LD  R R+A   K         ++ +  V+ +    +G+  LY GF P+VLG++ Y GL F  Y+++K +     G  +       + G         ASYPLD VRRRM
Sbjct:   40 GALAGALAKTAVAPLDRTKIIFQ----------VSSKRFSAKEAFRVLYYTYLNEGFLSLWRGNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPWPRLFAGALAGTTAASLTYPLDLVRARMAVTPKE-------MYSNIFHVFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQPYPFERMIFGACAGLIGQSASYPLDVVRRRM 254          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TAAC_ARATH (Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=TAAC PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17
Identity = 71/245 (28.98%), Postives = 106/245 (43.27%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL--LVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKYSSSLDA 730
            G  + A +K+  AP++RIKLL+Q       Q +  +K  G  +        EG+   W+GN   VIR  P  A+     +TYK +F   + +DG    ++                 Y LD  R RLA          E  +  +  V    L  +G+A  Y G GPS+L I  Y  + F ++D +K  L         S L + ++   + TG     YPLDT+RR+M +   +   Y S LDA
Sbjct:  122 GAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQ-QSAKKAIGFIEAITLIGKEEGIKGYWKGNLPQVIRIVPYSAVQLFAYETYKKLF---RGKDGQLS-VLGRLGAGACAGMTSTLITYPLDVLRLRLA---------VEPGYRTMSQVALNMLREEGVASFYNGLGPSLLSIAPYIAINFCVFDLVKKSLPEKYQQKTQSSLLTAVVAAAIATG---TCYPLDTIRRQMQL---KGTPYKSVLDA 346          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17
Identity = 68/244 (27.87%), Postives = 104/244 (42.62%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASD-GIAGLYRGFGPSVLGIVVYRGLYFGMYDSIK-------PVLLVGP-------LEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            G ++   +KT  AP++R+K+L+Q  +   K       + G+    R     EG + L++GN A +IR FP  A+ F   + YK+    K    G+   +M                 Y LD  R RLA   K     GE  ++G++  ++   A + G  G YRG  P++LG+  Y  + F  + ++K       P LL  P       L      + L G      A   SYP D  RRRM +
Sbjct:   43 GSIAGCCAKTTVAPLDRVKVLLQAHNHHYK-------HLGVLSPLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGKMSMTAVIC-TYPLDVVRVRLAFQVK-----GEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYASVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVARAIAQTISYPFDVTRRRMQL 273          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 66/232 (28.45%), Postives = 110/232 (47.41%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNG-IADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG + AVS+T  AP++R+K+L+Q            R  N  I   F +     G  SLWRGN  NV++  P  A+ F   +  K +    ++     + ++                +Y ++  +TR+A      + +G  Q++G++D  RK LA +G+A  Y+G+ P++LGI+ Y G+   +Y+++K   L    V   +         G   +T   +ASYPL  VR RM
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVH--------ASRSNNMCIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSDQETLRIHERLVAGSLAGAIAQSS----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRM 405          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 65/232 (28.02%), Postives = 110/232 (47.41%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNG-IADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG + AVS+T  AP++R+K+L+Q            R  N  I   F +     G  SLWRGN  NV++  P  A+ F   +  K +    ++     + ++                +Y ++  +TR+A      + +G  Q++G++D  R+ LA +G+A  Y+G+ P++LGI+ Y G+   +Y+++K   L    V   +         G   +T   +ASYPL  VR RM
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVH--------ASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSS----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRM 405          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 63/232 (27.16%), Postives = 109/232 (46.98%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYN-GIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG + AVS+T  AP++R+K+L+Q            R  N  +   F +     G+ SLWRGN  NVI+  P  A+ F   +  K +    ++  G  + ++                +Y ++  +TR+A      + +G  Q+ G++D  +K L  +G++  Y+G+ P++LGI+ Y G+   +Y+++K   L        +         G   +T   +ASYPL  VR RM
Sbjct:  237 GGGAGAVSRTCTAPLDRLKVLMQVH--------ASRSNNMSMLGGFTQMIREGGIRSLWRGNGINVIKIAPESAIKFMAYEQMKRIIGSDQETLGIHERLVAGSLAGVIAQSS----IYPMEVLKTRMA-----LRKTG--QYQGMLDCGKKILLKEGVSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTISSTCGQLASYPLALVRTRM 449          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 67/231 (29.00%), Postives = 114/231 (49.35%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVG-PLEGSFLASFLL---GWTVTTGAGVASYPLDTVRRRM 682
            GG + AVS+T  AP++R+K+L+Q       QG+     +G+    +      GV SLWRGN  NVI+  P  AL F   +  K +    ++  G ++  +                +Y ++  +TRLA      + +G  Q+ G+ D  +  L ++G++  Y+G+ P++LGI+ Y G+   +Y+++K   L     E +    F+L   G   +T   +ASYPL  +R RM
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVHG---CQGKSMCLMSGLTQMIKEG----GVRSLWRGNGINVIKIAPETALKFMAYEQIKRVMGSSQETLGISERFVAGSLAGVIAQST----IYPMEVLKTRLA-----LRKTG--QYKGISDCAKHILKTEGMSAFYKGYVPNMLGIIPYAGIDLAVYETLKNTWLQRYGTENADPGVFVLLACGTVSSTCGQLASYPLALIRTRM 405          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 64/232 (27.59%), Postives = 110/232 (47.41%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNG-IADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG + AVS+T  AP++R+K+L+Q            R  N  I   F +     G  SLWRGN  NV++  P  A+ F   +  K +    ++     + ++                +Y ++  +TR+A      + +G  Q++G++D  ++ LA +G+A  Y+G+ P++LGI+ Y G+   +Y+++K   L    V   +         G   +T   +ASYPL  VR RM
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVH--------ASRSNNMCIIGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSS----IYPMEVLKTRMA-----LRKTG--QYSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRM 405          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 61/237 (25.74%), Postives = 105/237 (44.30%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGE 700
            GG + AVS+T  AP++R+K+L+Q                GIA  F +     G+ SLWRGN  NV++  P  A+ F   +  K +    ++  G  + ++                +Y ++  +TRLA            Q++G+ D  +     +G+   Y+G+ P++LGI+ Y G+   +Y+++K   L        +         G   +T   +ASYPL  VR RM   + +
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVHATRSNS-------MGIAGGFTQMIREGGLRSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSNQETLGILERLVSGSLAGAIAQSS----IYPMEVLKTRLALGRTG-------QYSGIADCAKHIFKKEGMTAFYKGYIPNMLGIIPYAGIDLAVYETLKNSWLQRFATDSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASQ 411          
The following BLAST results are available for this feature:
BLAST of FC931412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CMC2_CAEEL7.755e-1827.64Putative calcium-binding mitochondrial carrier F55... [more]
S2542_HUMAN1.013e-1728.88Solute carrier family 25 member 42 OS=Homo sapiens... [more]
TAAC_ARATH1.323e-1728.98Thylakoid ADP,ATP carrier protein, chloroplastic O... [more]
GDC_RAT1.323e-1727.87Graves disease carrier protein (Fragment) OS=Rattu... [more]
SCMC2_BOVIN5.027e-1728.45Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE6.565e-1728.02Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR1.120e-1627.16Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2A_DANRE1.463e-1629.00Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_RAT1.910e-1627.59Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2B_DANRE2.495e-1625.74Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC34104H01EF PostHarvP1 Citrus clementina cDNA clone C34104H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931412 ID=FC931412; Name=FC931412; organism=Citrus clementina; type=EST; length=736bp
GGGTGGTGTCTCCGCCGCTGTCTCTAAGACCGCTGCTGCCCCCATTGAGC
GTATCAAGCTCCTGATCCAGAACCAGGATGAGATGCTCAAGCAGGGTCGC
CTCGACCGCAAGTACAACGGTATTGCTGACTGCTTCCGCCGTACCGCCGC
CGCTGAGGGTGTTGTCTCCTTGTGGCGTGGTAACACCGCCAACGTCATCC
GTTACTTCCCCACTCAGGCCCTGAACTTCGCTTTCCGCGACACCTACAAG
TCCATGTTCGCCTACAAGAAGGACCGTGATGGATACGCCAAGTGGATGAT
GGGTAACCTTGCCTCCGGTGGTGCCGCCGGTGCCACTTCCCTCCTGTTCG
TCTACTCCCTGGACTACGCCCGTACCCGTCTGGCCAACGATGCCAAGTCC
TCCAAGGGCTCCGGTGAGCGCCAGTTCAACGGTCTCGTCGATGTTTACCG
CAAGACCCTCGCCTCCGACGGTATTGCCGGTCTCTACCGTGGCTTCGGTC
CCTCCGTTCTCGGAATTGTCGTCTACCGTGGTCTCTACTTCGGAATGTAC
GATTCCATCAAGCCCGTCCTCCTCGTTGGTCCTCTTGAGGGCTCTTTCCT
CGCCTCCTTCCTGCTCGGCTGGACCGTCACCACCGGTGCCGGTGTTGCCT
CTTACCCTCTTGACACCGTTCGCCGTCGCATGATGATGACCTCTGGTGAG
GCCGTCAAGTACTCCAGCTCCCTGGATGCTGCCCGC
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