FC931412

Overview
NameFC931412
Unique NameFC931412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15297 contig Ccv1_Contig15297:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_NEUCR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Neurospora crassa GN=tpc-1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 66/247 (26.72%), Postives = 105/247 (42.51%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK----------YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMF-----AYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPL---EGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMM 688
            G  +  +S+   AP++ +K+ +Q Q   L    L ++          Y G     R     EG+  LW+GN    + Y    A+ F    TY+S+      A+ KD++      +                 Y LD  RTR A          ER +  LV   +   AS+G+ G +RG GP +  I+ Y G +F +Y++++P L    L    GS +A  L      TG    ++PLD VR+R+ +
Sbjct:   21 GATAGLISRFVIAPLDVVKIRLQLQHHSLSDPLLHQRRAEIIGGGPVYKGTLPTIRHILRTEGLTGLWKGNIPAELLYVSYAAVQFT---TYRSITQFLQAAFPKDQNKQLPPSVESFIAGASAGGVATAVTYPLDLLRTRFAAQGV------ERVYPSLVQALKTIYASEGVTGYFRGLGPGLAQIIPYMGTFFCVYETLRPRLSKLELPYSSGSAVAGVLASVMAKTG----TFPLDLVRKRIQV 254          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 64/232 (27.59%), Postives = 106/232 (45.69%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYN-GIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GG + AVS+T  AP++R+K+L+Q            R  N  I   F       G  SLWRGN  NVI+  P  A+ F   +  K +    ++  G  +  +                +Y ++  +TR+A      + +G  Q+ G++D  +K L  +G++  Y+G+ P++LGI+ Y G+   +Y+++K   L        +         G   +T   +ASYPL  VR RM
Sbjct:  238 GGGAGAVSRTCTAPLDRLKVLMQVH--------ASRSNNMSILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHERFVAGSLAGVIAQSS----IYPMEVLKTRMA-----LRKTG--QYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTVSSTCGQLASYPLALVRTRM 450          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 66/230 (28.70%), Postives = 103/230 (44.78%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPV---LLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GGV+ A+S+T  AP +RIK+ +Q      K  +L     G+  C     A  G+ S WRGN  NVI+  P  A+ F   D  K     ++ + G     +                +Y ++  +TRLA      + +G+    G+     K    +GI   Y+G+ P++LGI+ Y G+   +Y+S+K +         E   LA    G   +T   +ASYPL  VR R+
Sbjct:  251 GGVAGAMSRTCTAPFDRIKVYLQVNST--KTNKL-----GVVSCVHLLHAEGGIKSFWRGNGINVIKIAPESAMKFMCYDQIKRWM--QEYKGGAELSTIERLLAGSSAGAISQTAIYPMEVMKTRLA-----LRRTGQLD-KGMFHFAHKMYTKEGIKCFYKGYLPNLLGIIPYAGIDLTVYESLKSMYTKYYTEHTEPGVLALLACGTCSSTCGQLASYPLALVRTRL 465          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 67/231 (29.00%), Postives = 107/231 (46.32%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLEGSFLASFLL----GWTVTTGAGVASYPLDTVRRRM 682
            G V+ AVS+T  AP++R+K+ +Q      K  RL+     I    R      GV+SLWRGN  NV++  P  A+ F   +  K     +++       +                 +Y ++  +TRL     + + +G  Q+ GL+D  ++ L  +G    YRG+ P+VLGI+ Y G+   +Y+++K   L      S     L+    G   +T   +ASYPL  VR RM
Sbjct:  191 GAVAGAVSRTGTAPLDRLKVFMQVHAS--KSNRLN-----ILGGLRNMIQEGGVLSLWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQE----TLHVQERFVAGSLAGATAQTIIYPMEVLKTRL-----TLRRTG--QYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNRWLQQYSHESANPGILVLLGCGTISSTCGQIASYPLALVRTRM 403          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 66/231 (28.57%), Postives = 105/231 (45.45%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLV----GPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            G V+ AVS+T  AP++R+K+ +Q      K  RL+     I    R      G+ SLWRGN  NV++  P  A+ F   +  K     +++       +                 +Y ++  +TRL     + + +G  Q+ GL+D  R+ L  +G    YRG+ P+VLGI+ Y G+   +Y+++K   L        +   L     G   +T   +ASYPL  VR RM
Sbjct:  192 GAVAGAVSRTGTAPLDRLKVFMQVHAS--KTNRLN-----ILGGLRSMVLEGGIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAILGQQE----TLHVQERFVAGSLAGATAQTIIYPMEVLKTRL-----TLRRTG--QYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILVLLACGTISSTCGQIASYPLALVRTRM 404          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: YP011_YEAST (Uncharacterized mitochondrial carrier YPR011C OS=Saccharomyces cerevisiae GN=YPR011C PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 74/259 (28.57%), Postives = 109/259 (42.08%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWM-MXXXXXXXXXXXXXXXFVYSLDYARTRLA------NDAKSSKGSGERQFNGLVDVYRKTLASD-GIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLL----VGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRR---MMMTSGE-AVKYSSSLDA 730
            GGV+ AVS+T  +P ER+K+L+Q Q       R      GI    R+    EG   L+RGN  N IR FP  A+ F   +  K    +    +G  +                     Y LD  +TRL+      +    SK     +  G+  +  +T   + G+ GLYRG  P+ LG+V Y  L F +Y+ ++   +      P   S L    +G      A   +YP D +RRR   + M   E   +Y+S  DA
Sbjct:   29 GGVAGAVSRTVVSPFERVKILLQVQSSTTSYNR------GIFSSIRQVYHEEGTKGLFRGNGLNCIRIFPYSAVQFVVYEACKKKLFHVNGNNGQEQLTNTQRLFSGALCGGCSVVATYPLDLIKTRLSIQTANLSSLNRSKAKSISKPPGIWQLLSETYRLEGGLRGLYRGVWPTSLGVVPYVALNFAVYEQLREFGVNSSDAQPSWKSNLYKLTIGAISGGVAQTITYPFDLLRRRFQVLAMGGNELGFRYTSVWDA 281          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 65/230 (28.26%), Postives = 102/230 (44.35%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPV---LLVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRM 682
            GGV+ A+S+T  AP +RIK+ +Q      K  +L     G+  C     A  G+ S WRGN  NVI+  P  A+ F   D  K     ++ + G                      +Y ++  +TRLA      + +G+    G++    K    +GI   Y+G+ P++LGI+ Y G+   +Y+++K           E   LA    G   +T   +ASYPL  VR R+
Sbjct:  252 GGVAGAMSRTCTAPFDRIKVYLQVNST--KTNKL-----GVVSCVHLLHAEGGLKSFWRGNGINVIKIAPESAMKFMSYDQIKRWI--QEYKGGAELTTYERLFAGSSAGAISQTAIYPMEVMKTRLA-----LRRTGQLD-RGMIHFAHKMYDKEGIRCFYKGYLPNLLGIIPYAGIDLTVYETLKSCYTQYYTEHTEPGVLALLACGTCSSTCGQLASYPLALVRTRL 466          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_PHANO (Mitochondrial thiamine pyrophosphate carrier 1 OS=Phaeosphaeria nodorum GN=TPC1 PE=3 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 65/252 (25.79%), Postives = 101/252 (40.08%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQ-----GRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFA-------FRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSGERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVLLVGPLE---GSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKY 712
            G  +  VS+   AP++ IK+ +Q Q   L +     G     Y G     ++    EGV  LW+GN    + Y    ++ F+         DT  + +      + +                      Y LD  RTR A   K      +R +  +V   +     +G  G +RG G  V  IV Y GL+F  Y+S+KPV+   PL    GS  +  + G   +  +  A YPLDT R+R+ +      +Y
Sbjct:   21 GAAAGLVSRFVIAPLDVIKIRLQLQIHSLSEPTSYRGLNGPVYKGTLGTLKQILRDEGVTGLWKGNIPAELLYLTYGSVQFSAYTNISQMLDTIPAPYTLPSSANSFIS--------GAGAGAAATTVTYPLDLLRTRFAAQGK------DRVYTSIVASLKSIAQHEGPTGFFRGLGAGVSQIVPYMGLFFASYESLKPVMADSPLPLPLGS--SDAVAGVVASVVSKTAVYPLDTTRKRLQVQGPNRARY 256          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: TPC1_MAGGR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Magnaporthe grisea GN=TPC1 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 66/248 (26.61%), Postives = 98/248 (39.52%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRK--------YNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLANDAKSSKGSG-ERQFNGLVDVYRKTLASDGIAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL--LVGPLEGSFLASFLLGWTVTTGAGVASYPLDTVRRRMMMTSGEAVKY 712
            G  +  +++   AP++ +K+ +Q Q   L      R         Y G     R  A  EG+  LW+GN    + Y    A+ FA   +   +       D                        Y LD  RTR A     ++GSG +R +  L          +G  G +RG GP+V     + G++F  Y+S++  L  L  P  G  LA  L   T +T A  A +PLD VRRR+ +      KY
Sbjct:   22 GATAGMIARFVIAPLDVVKIRLQLQTHSLSDPLSQRAELLRGGPVYKGTLSTMRHIARQEGITGLWKGNVPAELLYITYSAVQFATYRSAAQLLHRVAGEDRQLPAAAESFVAGAAAGVTSTTVTYPLDLLRTRFA-----AQGSGDDRVYQSLRRAVADIWRDEGYRGFFRGIGPAVGQTFPFMGIFFAAYESLRAPLADLKLPFWGGQLA--LASMTASTLAKTAVFPLDLVRRRIQVQGPTRSKY 262          
BLAST of FC931412 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 69/255 (27.06%), Postives = 111/255 (43.53%), Query Frame = 2
Query:    2 GGVSAAVSKTAAAPIERIKLLIQNQDEMLKQGRLDRKYNGIADCFRRTAAAEGVVSLWRGNTANVIRYFPTQALNFAFRDTYKSMFAYKKDRDGYAKWMMXXXXXXXXXXXXXXXFVYSLDYARTRLA--------NDAKSSKGSGERQ------FNGLVDV-YRKTLASDG------IAGLYRGFGPSVLGIVVYRGLYFGMYDSIKPVL--LVGPLEGSFLASF-LLGWTVTTGAG-VASYPLDTVRRRMMMT 691
            GGVS  ++K+  AP+ER+K+L Q + +M         +N +    +     EG+  LW+GNTA ++R FP  A+ +   D  K+ F   K      K  +                 Y LD  R RLA        N++ +SK             NG+  V   K++  +G        G++RG  P++ G + Y G+ +  ++  K +        +G  +  + L+   V  G G  A+YPLD VRRR+  T
Sbjct:   18 GGVSGVIAKSTIAPLERVKILYQVKSKMYS-------FNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKNNFVTDK------KSSVQIFIAGSLGFSCAILLTYPLDVIRARLALSYSNNNNNNSINSKNLNSSTQPPKVLKNGIGAVNIEKSIDFNGYKTKGLFKGIWRGILPTLYGSIPYAGVGYSSFEYFKRIAPDSFRNEKGDVIGIYKLISGGVAGGLGQTAAYPLDVVRRRIQTT 259          
The following BLAST results are available for this feature:
BLAST of FC931412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TPC1_NEUCR3.258e-1626.72Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
SCMC2_XENLA3.258e-1627.59Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEEL3.258e-1628.70Probable calcium-binding mitochondrial carrier F17... [more]
SCMC3_MOUSE4.255e-1629.00Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC3_HUMAN4.255e-1628.57Calcium-binding mitochondrial carrier protein SCaM... [more]
YP011_YEAST9.480e-1628.57Uncharacterized mitochondrial carrier YPR011C OS=S... [more]
CMC3_CAEBR1.617e-1528.26Probable calcium-binding mitochondrial carrier CBG... [more]
TPC1_PHANO4.705e-1525.79Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_MAGGR1.369e-1426.61Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MCFR_DICDI1.788e-1427.06Mitochondrial substrate carrier family protein R O... [more]

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Properties
Property NameValue
Genbank descriptionC34104H01EF PostHarvP1 Citrus clementina cDNA clone C34104H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931412 ID=FC931412; Name=FC931412; organism=Citrus clementina; type=EST; length=736bp
GGGTGGTGTCTCCGCCGCTGTCTCTAAGACCGCTGCTGCCCCCATTGAGC
GTATCAAGCTCCTGATCCAGAACCAGGATGAGATGCTCAAGCAGGGTCGC
CTCGACCGCAAGTACAACGGTATTGCTGACTGCTTCCGCCGTACCGCCGC
CGCTGAGGGTGTTGTCTCCTTGTGGCGTGGTAACACCGCCAACGTCATCC
GTTACTTCCCCACTCAGGCCCTGAACTTCGCTTTCCGCGACACCTACAAG
TCCATGTTCGCCTACAAGAAGGACCGTGATGGATACGCCAAGTGGATGAT
GGGTAACCTTGCCTCCGGTGGTGCCGCCGGTGCCACTTCCCTCCTGTTCG
TCTACTCCCTGGACTACGCCCGTACCCGTCTGGCCAACGATGCCAAGTCC
TCCAAGGGCTCCGGTGAGCGCCAGTTCAACGGTCTCGTCGATGTTTACCG
CAAGACCCTCGCCTCCGACGGTATTGCCGGTCTCTACCGTGGCTTCGGTC
CCTCCGTTCTCGGAATTGTCGTCTACCGTGGTCTCTACTTCGGAATGTAC
GATTCCATCAAGCCCGTCCTCCTCGTTGGTCCTCTTGAGGGCTCTTTCCT
CGCCTCCTTCCTGCTCGGCTGGACCGTCACCACCGGTGCCGGTGTTGCCT
CTTACCCTCTTGACACCGTTCGCCGTCGCATGATGATGACCTCTGGTGAG
GCCGTCAAGTACTCCAGCTCCCTGGATGCTGCCCGC
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