FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 72/110 (65.45%), Postives = 81/110 (73.64%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQ SFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++T VEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:   95 DQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 71/111 (63.96%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPV-AQKSGCC 331
            DQESFNNVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV + TAK +AD++GIPF+ETSAK++T VEQAFM MAA IK+RM    + ++++P        PV A K GCC
Sbjct:   95 DQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMN-NARPPTVQIKGQPVAQKSGCC 331
            + ESFNNVKQWL+EIDRYA+++V KLL+GNK D+  +KVVS ET +A ADE+GIPF+ETSAKDS  VEQAF+ +A  IK +M SQ + N  + P TVQ+KGQP+ Q +G C
Sbjct:   92 EMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 70/110 (63.64%), Postives = 79/110 (71.82%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK++T VEQAFM MAA IK RM    +    R P ++I   PV Q  G C
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 70/110 (63.64%), Postives = 79/110 (71.82%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK++T VEQAFM MAA IK RM    +    R P ++I   PV Q  G C
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQK----SGCCST 337
            D ESFNNVKQWL+EIDRYA+D+V KLLVGNKCDL  N+ V    A+A+A E+GIPF+ETSAK+S  VE+AF+AM+A+I K +  SQ ++       VQ+KG+P+ Q+    S CCST
Sbjct:   92 DMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 69/110 (62.73%), Postives = 79/110 (71.82%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK FAD +G+PF+ETSAK++T VEQAFM MAA IK RM    +    R P ++I   PV   SG C
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKSASGGC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 69/110 (62.73%), Postives = 79/110 (71.82%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK FAD +G+PF+ETSAK++T VEQAFM MAA IK RM    +    R P ++I   PV   SG C
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPASGGC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.243e-30
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM-ASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            D+ +F NV+QWL EIDR+A +NVNKLLVGNK DL A KVV + TAKAFAD + IPF+ETSAK ST VEQAFM MA  IK+R+ ASQP+    +   V     P++ KSGCC
Sbjct:   92 DKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 69/110 (62.73%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            DQES+ NVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK++T VEQAFM MAA IK RM    +    R P ++I   PV    G C
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB1A_PIG1.853e-3465.45Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_LYMST1.569e-3363.96Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RABD1_ARATH2.958e-3261.26Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1B_PIG4.272e-3163.64Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1B_BOVIN4.272e-3163.64Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
YPTM1_MAIZE5.579e-3157.26GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1B_RAT7.287e-3162.73Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MOUSE9.517e-3162.73Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1A_DICDI1.243e-3060.36Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1B_PONAB2.120e-3062.73Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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