FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            +QE+F   K W+ E+ R AS ++   L GNK DL   ++V YE A+A+AD+  + FMETSAK +  V   F+A+A  +             R   V +  Q    KS CCS
Sbjct:  104 NQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+AD+  + FMETSAK +  V + FMA+A  +        +    R   V ++    A +S CCS
Sbjct:  107 DTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQESNPASRSQCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 33/81 (40.74%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM 247
            +++FN++  WL +   YA+ N+  +L+GNK D+ + + VSYE  + FADE G+ F+ETSAK ++ VE+AF+  A+ I +++
Sbjct:   90 RDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKI 170          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK +  +E+AF+ +A  I +     +P+  N     +   G     KS CC
Sbjct:   95 KSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+AD+  + FMETSAK +  V + FMA+A  +        +    R   V ++    A +S CCS
Sbjct:  107 DTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+AD+  + FMETSAK +  V + FMA+A  +        +    R   V ++    A +S CCS
Sbjct:  107 DTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM------ASQPSMNNARPPTVQIKGQPVAQKSGC 328
            +QESF  V+ W  +I  Y+ DN   +LVGNKCDL   +VVS E  +  A ++G  F E SAK++  V+Q F  +   I D+M      +S P  N   P    +   P  Q S C
Sbjct:  106 NQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM-----ASQPSMNNARPPTVQIKGQPVAQKSGC 328
            +QESF  V+ W  +I  Y+ DN   +LVGNKCDL   +VV  E  +  AD++G  F E SAK++  V+Q F  +   I ++M      S  S +N + P V     P  Q S C
Sbjct:  106 NQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAV--GDAPAPQPSSC 217          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI 235
            +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK +  VE+AF+  A +I
Sbjct:   91 RETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAI 167          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK +  +E+AF+ +A  I +     +P+  N     +   G     KS CC
Sbjct:   95 KSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB5B_HUMAN2.355e-1336.94Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB5C_MOUSE3.076e-1334.86Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB2A_DICDI3.076e-1340.74Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB10_CHICK3.076e-1335.78Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB5C_PONAB4.017e-1334.86Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_HUMAN4.017e-1334.86Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB3D_RAT4.017e-1337.39GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3D_HUMAN4.017e-1337.72Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB2A_MAIZE4.017e-1345.45Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB10_PONAB4.017e-1335.78Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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