FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK +  +E+AF+ +A  I +     +P+  N     +   G     KS CC
Sbjct:   95 KSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK +  +E+AF+ +A  I +     +P+  N     +   G     KS CC
Sbjct:   95 KSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPS 262
            ++ SF++++ WL EI  +A D+V  +L+GNK D    + V  E A+  A + G+PFMETSAK    V+ AF A+A  +K R    PS
Sbjct:  148 NKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPS 234          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E GI F ETSAK +  +E+AF+ +A  I +     +P+  N     +   G     KS CC
Sbjct:   95 KSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-----KDRMASQPSMNNARPPTVQIK-------GQPVAQKSGCCST 337
            +++F+++ +WL E+  +A  N+  +L GNK DL   + V  E AK FA + G+ F+ETSA ++T +E AF+ +   I     K  +A+  + +N+ P ++  K       GQ +  K  CCS+
Sbjct:  100 RQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM------ASQPSM--------NNARPPTVQIKGQPVAQKSGCC 331
            +E+FN++  WL +  ++A+ N+  +L+GNKCDLT  + V+ E  + FA E G+ F+ETSA+ +  VE+AF+  A  I  ++       S  S          NA P TV+      A+ S CC
Sbjct:   91 RETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 38/118 (32.20%), Postives = 68/118 (57.63%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-----KDRMASQPSMNN--ARPPTVQIKGQPVAQKSGCCST 337
            +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS E  +A A++ G+ F+ETSA ++  +E+AF  +   I     K  +A+Q + +N   +  T+ +      Q+  CCST
Sbjct:   97 RQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQRRSCCST 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+A++  + FMETSAK +  V + FMA+A  +        +    R   V ++    A +S CCS
Sbjct:  107 DTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-----KDRMASQPSMNNARPP----TVQIKGQPVAQKSGCCST 337
            +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS +   A +++ G+ F+ETSA ++T +E+AF  +   I     K  +A+Q +   A  P    T+ +       K GCCST
Sbjct:   97 RQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RABY_DICDI (Ras-related protein RabY OS=Dictyostelium discoideum GN=rabY PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK 319
            ++ SF+N+K W+ +I  Y   N   ++V NK DL   KV+  + AK++ D + IPF+ETS+K S+ VE  F+ +  ++   + ++P++   +    Q + Q   Q+
Sbjct:   97 NENSFSNLKHWIKDIKLYGRPNAINIVVSNKSDLVNEKVIDSDVAKSYCDSLEIPFIETSSKHSSNVEDCFVLLIKNVMKYLETEPTIPQQQQQQQQQQQQQQQQQ 202          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB10_MOUSE4.017e-1335.78Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN4.017e-1335.78Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB26_BOVIN5.246e-1341.38Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB10_CANFA5.246e-1335.78Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RB11C_TOBAC6.852e-1332.52Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPTC4_CHLRE8.949e-1334.96GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RB2BV_BETVU8.949e-1332.20Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB5C_BOVIN1.169e-1233.94Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RB11C_LOTJA1.994e-1232.50Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RABY_DICDI1.994e-1231.13Ras-related protein RabY OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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