FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DST VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            ++F   K W+ E+ R AS N+   L GNK DL   + V ++ A+ +AD+  + FMETSAK +  V + FMA+A  +             R   V ++      +S CCS
Sbjct:  107 DTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-----KDRMASQPSMNNARPPTVQIKGQPV----------AQKSGCC 331
            +++F+++ +WL E+  +A  N+  +L+GNKCDL   + V  E AK FA++ G+ F+ETSA ++T VE AF  +   I     K  +A+  S  N    +  + GQ +          A+++ CC
Sbjct:  102 RQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGN--SASLSGQKIIIPGPAQEIPAKRNMCC 223          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RB11A_RAT3.401e-1242.70Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT3.401e-1242.70Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB3.401e-1242.70Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG3.401e-1242.70Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE3.401e-1242.70Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN3.401e-1242.70Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK3.401e-1242.70Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA3.401e-1242.70Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RAB5C_CHICK3.401e-1233.03Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RB11A_LOTJA4.441e-1232.26Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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