FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI 235
            Q SF+NV +WL E+  +A  N+  +LVGNK DL   + VS E A+AFA E  + F+ETSA D++ VE+AF  +   I
Sbjct:   95 QSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPV---------AQKSGCCST 337
            +F NV++WL E+  +   N+  +LVGNK DL   + VS E AKAFA+     FMETSA +S  VE AF  +   I  ++  + ++     P    KGQ +          +K GCCS+
Sbjct:  101 TFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIY-KVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKVGCCSS 217          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNN--------ARPPTVQIKGQ-PVAQKSGCCS 334
            +F N  +WL E+  +   N+  +L+GNKCDL     V  E AKAFA+   + FMETSA D+T VE AF  +   I  ++ S+ S++          +  T+ +K    V ++ GCCS
Sbjct:  100 TFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQI-HKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPP 283
            +ESF  + +WL EI++YAS+ V  +LVGNK DL   + VS + A+ F++   + ++ETSAK+S  VE+ F+ +A  +         +NN   P
Sbjct:   94 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPP 283
            +ESF  + +WL EI++YAS+ V  +LVGNK DL   + VS + A+ F++   + ++ETSAK+S  VE+ F+ +A  +         +NN   P
Sbjct:   94 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPP 283
            +ESF  + +WL EI++YAS+ V  +LVGNK DL   + VS + A+ F++   + ++ETSAK+S  VE+ F+ +A  +         +NN   P
Sbjct:   94 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG------CC 331
            +++  V++WL E+  +A   +  +LVGNK DL+ ++ V  E A+ FA+  G+ F+ETSA DST VE AF  +   I  +++ Q   NNAR   V +   P  Q+ G      CC
Sbjct:   98 QTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ-RQNNARTNAVTLGSGPAGQELGPGEKRACC 210          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAF 214
            +F NV +WL+E++ ++   V K+L+GNKCDL + + VS E  K+ A+  G+ FMETSA DST V+ AF
Sbjct:   99 TFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAF 166          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSM 265
            ++SF ++  WL +  +++S +V  +L+GNK DL AN+ VS   AK FA++ G+ F ETSAK +  V++AF      I  ++ S P +
Sbjct:  109 RDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGL 195          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI 235
            +E+FN++  WL +  ++A+ N+  +L+GNKCDLT  + V+ E  + FA E G+ F+ETSA+ +  VE+AF+  A  I
Sbjct:   91 RETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
YPT3_SCHPO5.801e-1246.75GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11B_TOBAC5.801e-1236.44Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1A_ARATH5.801e-1235.90Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAB30_MOUSE7.576e-1237.63Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN7.576e-1237.63Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN7.576e-1237.63Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB25_BOVIN7.576e-1236.84Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
ARA4_ARATH7.576e-1248.53Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB2B_DICDI9.894e-1237.93Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
YPTV4_VOLCA1.292e-1141.56GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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