FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM-ASQPSMNNARPPTVQIKGQPVAQKSGCCS 334
            +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV     +  A E  I F ETSAK +  +E+AF+ +A  I  +    +P   N     +   G     K  CCS
Sbjct:   95 KSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVKEPDRENV---DISTTGGGTGLKK-CCS 200          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNAR 277
            ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA D T VE AF  +   I  R+ SQ  M++ R
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIY-RIVSQKQMSDRR 185          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK-GQPVAQKSGCC 331
            D +SF   K W+ +I++Y  D +  +LVGNK D+ A + V++E  +  A+++   F+E SAK++  V Q F  +   I      + +M N++    Q+     V QK GCC
Sbjct:   92 DPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFDLLVQDI------EATMKNSKVAQNQLNLNSEVGQKRGCC 196          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM-----------------ASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            +E+FN++  WL +  +++S N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK +  VE+AF+  A  I  ++                   Q    +  P   Q   + +   SGCC
Sbjct:   91 RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPV--------AQKSGCCS 334
            +F NV+ WL E+  +   N+  +LVGNK DL     V  E AK+FA++  + FMETSA ++T VE AF  +   I   ++ +     +    V  KG  +         +K GCCS
Sbjct:  100 TFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKGGCCS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-----------KDRMASQPSMNNARPPTVQIKGQPVA--QKSGCC 331
            ++SF++V +WL E+  +A  N+  +L+GNK DL   +VV  E AK FA+   + FMETSA +ST VE AFM +   I            + + S  + +  +   + + GQ  A   K+ CC
Sbjct:  103 RQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 224          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFM--------AMAASIKDRMASQPSMNNARPPTV--QIKGQPVAQKSGCCS 334
            +F NV++WL E+  +A  N+  +LVGNK DL   + V  E A+AF +  G+ F+ETSA +ST VE+AF          ++  + D   ++P +   R   V          +K GCCS
Sbjct:   99 TFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQ---------IKGQPVAQKSGCC 331
            Q ++ +V++W+ E+   A  N+  +LVGNK DL   + VS + AK F+++  + F+ETSA DS+ VE AF  +   I   M S+PS +     T+             +P A KSGCC
Sbjct:   98 QATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIM-SRPSHSTGPQTTIDSNTETIILPTTSEPPAAKSGCC 214          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK----------GQPVAQKSGC 328
            + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK    VE AF+  A  I   +       NA    VQ K           +P  Q+ GC
Sbjct:   96 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK----------GQPVAQKSGC 328
            + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK    VE AF+  A  I   +       NA    VQ K           +P  Q+ GC
Sbjct:   96 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB10_DISOM1.292e-1134.55Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RB11A_BOVIN1.688e-1141.57Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RABC_DICDI1.688e-1132.43Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB2B_HUMAN1.688e-1131.75Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAA1C_ARATH1.688e-1134.48Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RGP1_ORYSJ2.204e-1134.43Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
YPTC6_CHLRE2.879e-1134.75Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_DICDI2.879e-1135.59Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB14_RAT2.879e-1133.90Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB2.879e-1133.90Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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