FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK----------GQPVAQKSGC 328
            + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK    VE AF+  A  I   +       NA    VQ K           +P  Q+ GC
Sbjct:   96 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK----------GQPVAQKSGC 328
            + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK    VE AF+  A  I   +       NA    VQ K           +P  Q+ GC
Sbjct:   96 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK----------GQPVAQKSGC 328
            + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK    VE AF+  A  I   +       NA    VQ K           +P  Q+ GC
Sbjct:   96 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK----------GQPVAQKSGC 328
            + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK    VE AF+  A  I   +       NA    VQ K           +P  Q+ GC
Sbjct:   96 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC 328
            + SF +V  W+ ++ +YA  N+ +LL+GNK DL+  + VS   A++ A+   I   +ETSAKDS+ VE+AF+ +A  +  R    P  +   P  +Q+  + + +  GC
Sbjct:   72 RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG-PLFSEKSPDHIQLNSKDIGEGWGC 179          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAF---------MAMAASIKDRMASQPSMNN-----ARPPTVQIKGQPVAQKSGCC 331
            ++ NV++WL E+  +A +N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA DST VE+AF         +     I DR A   S  N     + PPT    GQ  + K  CC
Sbjct:   98 TYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGNNVVDISVPPTTD--GQK-SNKLQCC 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 2
Query:    5 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC 328
            + SF +V  W+ ++ +YA  N+ +LL+GNK DL+  + VS   A++ A+   I   +ETSAKDS+ VE+AF+ +A  +  R    P  +   P  +Q+  + + +  GC
Sbjct:  103 RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG-PLFSEKSPDHIQLNSKDIGEGWGC 210          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2
Query:   11 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNN---------ARPPTVQIKGQPVAQKSG--CCST 337
            +F +V +WL+E+  ++   V ++LVGNKCDL   + VS E  KA A+E G+ F+ETSA DST V+ AF  +   I + + S+  +N+          R   V+       Q SG  CCS+
Sbjct:   99 TFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNV-SRKQLNSDTYKDELTVNRVSLVKDDNSASKQSSGFSCCSS 217          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RABH_DICDI (Ras-related protein RabH OS=Dictyostelium discoideum GN=rabH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI 235
            DQE+F N K WLNE ++ A  +  K++V +K DL  NKVV     K++AD + + F ETS+K+S  VE+ F+ +   I
Sbjct:   91 DQETFENTKLWLNEANKLAPKDCIKIIVASKFDLE-NKVVDSNIVKSYADNLNLKFFETSSKNSINVEETFITLVEDI 167          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            +SF N+ +WL  ID++A+++V ++L+ NKCD+   +VV     +  A E  I F ETSAK +  +E+AF+ +   I +     +P+  N     +   G     KS CC
Sbjct:   95 KSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB14_PIG2.879e-1133.90Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE2.879e-1133.90Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN2.879e-1133.90Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.879e-1133.90Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RB43L_HUMAN3.760e-1133.94Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]
RB11B_DISOM3.760e-1137.19Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RAB43_HUMAN3.760e-1133.94Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
ARA1_ARATH6.413e-1136.67Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RABH_DICDI8.376e-1142.31Ras-related protein RabH OS=Dictyostelium discoide... [more]
RAB10_RAT8.376e-1133.03Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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