FC931414

Overview
NameFC931414
Unique NameFC931414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQ---IKGQPVAQKSGCC 331
            D++SF N++ W+  I+++A+D+VNK+L+GNKCD+   KVV     K+ ADE GI F+ETSAK+S  VE+AF+++A  IK RM   P   N +P  VQ     G    +K  CC
Sbjct:   99 DEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQPGTNLGANNNKKKACC 208          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK-----GQPVAQKSGCCST 337
            D+ SFNN++ W+  I+++ASDNVNK+LVGNK D+  +K  V     +A ADE GI F ETSAK +  VE+ F ++A  IK R+A   +   A+ P++ IK     G   A KS CC +
Sbjct:   99 DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQ-PSITIKPADQSGNQAAAKSACCGS 215          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 42/77 (54.55%), Postives = 63/77 (81.82%), Query Frame = 2
Query:    8 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIK 238
            +SFN++K+WL ++DR+AS +V KL+VGNKCDL + + V ++ AK FADE+ IP METSAK+ST +++AF+ +A+ IK
Sbjct:  119 DSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIK--------GQPVAQKSGCCST 337
            D+ SFNN++ W+  I+++ASDNVNK+LVGNK D+  +K  V     +A ADE GI F ETSAK +  VE+ F ++   IK R++   S   A P T++I         GQ   QKS CC T
Sbjct:   99 DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDS--RAEPATIKISQTDQAAGAGQ-ATQKSACCGT 216          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRM---------ASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            D+ SFNNV+ W+  I+++ASDNVNK+LVGNK DL  +K VVS    +A ADE G  F ETSAKD+  VE+AF+A+A  +  RM           Q  ++ A+P  +       AQ   CC
Sbjct:   97 DEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASI-KDRM-ASQPSMNN 271
            DQ ++NNV+ W+ EI RYA   V+++LVGNKCDL   K+V+   A+ +AD +GIPFME SA     VE+AFMAMA  I ++ M  S+PS+ N
Sbjct:   90 DQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVN 181          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK--SGCCS 334
            +Q SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PFMETSAK    VE AF+A+A  +K R   QP       P+ QI+    +QK  S CCS
Sbjct:  114 NQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQPD-----EPSFQIRDYVESQKKRSSCCS 221          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMAS-QPSMNNARPPTVQIKGQPVAQKSGC 328
            DQ SF NV +W+ EI+RYA DNV K+++GNK D+ + KVV    A+ FAD + I F ETSAK +  +E AF+++     DR+   +PS  ++   T+ +K +P +QKS C
Sbjct:   92 DQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEEFKPSSTSS--STIILK-KPQSQKSNC 198          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 331
            D++SFNN++ W   +  YA++ V  +LVGNKCDL   +VVS E  +A AD+ GIPF+E S+K +  VE+ F ++A  I+D +A     N +    + I        S CC
Sbjct:   95 DEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKG-NESGSGGINIAEGEENSASKCC 203          
BLAST of FC931414 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 2
Query:    2 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTTVEQAFMAMAASIK 238
            D++SF+NV+ W + ++++AS+NV K+L+GNKCD    + VS+E  +A ADE+G+ F+E SAK +  V++AF  +A  IK
Sbjct:   93 DKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIK 171          
The following BLAST results are available for this feature:
BLAST of FC931414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
RAB8A_DICDI1.377e-2145.13Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RB1BV_BETVU1.523e-2044.07Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB1C_DICDI4.431e-2054.55Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
ARA3_ARATH1.684e-1943.80Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPTV2_VOLCA2.872e-1944.17GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RABG2_DICDI1.576e-1751.09Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB37_MOUSE1.576e-1742.48Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RABA_DICDI2.058e-1743.64Ras-related protein RabA OS=Dictyostelium discoide... [more]
RYL1_YARLI4.585e-1739.09Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
YPT2_SCHPO1.334e-1645.57GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC34104H03EF PostHarvP1 Citrus clementina cDNA clone C34104H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931414 ID=FC931414; Name=FC931414; organism=Citrus clementina; type=EST; length=699bp
AGACCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACC
GTTATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGAT
CTCACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGA
TGAAATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCACCG
TGGAACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCA
AGTCAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGG
GCAGCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGT
AATATATCTGTCGTGGGTCTGCTGGACCTAATGGTGTGTAATGCTTTTCA
TCTTTTCAGTTGAAAGCTATGTCATCTGGACCAACCTCATCAAAAATTGT
TCTCCCTTTGTGGTTTACAGGACCAACACTCAGAAGATGATCCCCTTCCA
GTCCCTTTGTGGTTTATGAAAAGGCCTGTACAAAGTAGAAATGCTAATTT
GATGTTAGTATTCTTCTTTCTGTCCTATTCTTTATTGTGAATTGGCCTTA
ATAGCATGTTTGAATACTGTCAATAGCACTACCTTTTGTCCGTTTTGACA
GCGGTTATTGAAGACTTGAACCCATATTTGTTTAATTGTATGCTACATT
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