FC931416

Overview
NameFC931416
Unique NameFC931416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931416 vs. ExPASy Swiss-Prot
Match: TAD2B_PONAB (Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 47/171 (27.49%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   88 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLL----------FPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGK 570
            GY   R ++EIEYD DAE L++ +  N +D D E ELK   + +Y ++L ER+RRK+   + NL+               +R ++ EE+E+  + +   +F S ++ ++L +++ +E  +  +I+ELQ  +  G     E+  +   + K+E  +  + +  S +    GK
Sbjct:  165 GYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVPAFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNGITKMEESAEYEAARHKREKRKENKNLAGSKRGKEDGK 335          
BLAST of FC931416 vs. ExPASy Swiss-Prot
Match: TAD2B_HUMAN (Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 47/171 (27.49%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   88 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLL----------FPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGK 570
            GY   R ++EIEYD DAE L++ +  N +D D E ELK   + +Y ++L ER+RRK+   + NL+               +R ++ EE+E+  + +   +F S ++ ++L +++ +E  +  +I+ELQ  +  G     E+  +   + K+E  +  + +  S +    GK
Sbjct:  165 GYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVPAFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNGITKMEESAEYEAARHKREKRKENKNLAGSKRGKEDGK 335          
BLAST of FC931416 vs. ExPASy Swiss-Prot
Match: TAD2B_DROME (Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 59/205 (28.78%), Postives = 93/205 (45.37%), Query Frame = 1
Query:   88 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERN--------LSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENG--------QRVKESGQAGPSGKVLQRPN-SLKEVEVSPRGVVRGSTSLQP 651
            GY   R  FE EYD  AE L++++  +  DT+ +  LKL  + IY +RL ER RRK  + +  L+    F RN        L+ E+RE   +++V+ +F++  ++E LL S+  E  +  R  EL   +  G    +E   F +          G             +G   P    L  P  +L++VE+S  G    S S+ P
Sbjct:  171 GYMPNRDSFEREYDPTAEQLISNISLSSEDTEVDVMLKLAHVDIYTRRLRERARRKRMVRDYQLV--SNFFRNRNYAQQQGLTKEQREFRDRFRVYAQFYTCNEYERLLGSLEREKELRIRQSELYRYRYNGLTKIAECTHFEQHAATATHRSTGPYGHGKTDHTHTSNGSHRPPSSSLHSPQPNLRKVEMSSGGEA-SSNSIAP 372          
The following BLAST results are available for this feature:
BLAST of FC931416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TAD2B_PONAB4.044e-1427.49Transcriptional adapter 2-beta OS=Pongo abelii GN=... [more]
TAD2B_HUMAN4.044e-1427.49Transcriptional adapter 2-beta OS=Homo sapiens GN=... [more]
TAD2B_DROME3.785e-1228.78Transcriptional adapter 2B OS=Drosophila melanogas... [more]

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Properties
Property NameValue
Genbank descriptionC34104H05EF PostHarvP1 Citrus clementina cDNA clone C34104H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931416 ID=FC931416; Name=FC931416; organism=Citrus clementina; type=EST; length=741bp
CTTGCAGAACCTCAGTCAGACAGGAGCATTGGGGAGAAAAAACTTAGGAC
ATCTGGGGATGAGAGGCCGTCTATGAAGGAGTTGAGTGGCTATAACTTCA
AGAGACAAGAATTTGAGATTGAATACGATAATGATGCAGAGCATTTATTG
GCAGATATGGAATTTAATAAAAATGATACTGATGCTGAGCGTGAATTGAA
GCTGAGAGTACTGCGTATTTACGGAAAAAGGCTTGATGAGAGGAAACGCA
GGAAGGACTTCATACTTGAAAGAAACTTGCTATTCCCTGATCCATTTGAG
AGGAATCTCTCACCCGAAGAGAGGGAAATATATCAGCAATACAAGGTCTT
CATGCGGTTCCACTCAAAAGAAGATCATGAGGAGTTGCTCAAGAGTGTTA
TTGAAGAACATCGGATTGTCAAAAGAATACAAGAACTTCAGGAAGCACAA
GCTGCTGGTTGTCGTACATCCTCTGAGGCACATAGATTTCTAGAACAGAA
GAGGAAGAAGGAAGCTGAGGAAAATGGCCAGAGAGTGAAGGAAAGTGGCC
AGGCTGGTCCAAGTGGTAAAGTGTTGCAGAGGCCAAATAGTCTCAAAGAA
GTTGAGGTCAGCCCTCGTGGAGTTGTGAGGGGTTCCACCAGTTTACAGCC
ATTTGGCAATGATTCATACTCAACTATTGCTAGCTCCCTGGAAGACTGGG
ACATCTCTGGGTTTGTGGGTGCCGATCTACTTTCTGAAACT
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