FC931420

Overview
NameFC931420
Unique NameFC931420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: EPHB1_RAT (Ephrin type-B receptor 1 OS=Rattus norvegicus GN=Ephb1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 74/232 (31.90%), Postives = 132/232 (56.90%), Query Frame = 3
Query:    9 FRYKDLYIATKGFREK---------ELLGSGGFGRVYRGTLP---KSKIEIAVKKI-SHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYL-YNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYDHGTDPQTTHVVG---TLGYLAPEHSRTGKATTSADVFSFGAFLLEV-ACGRRP 647
            F Y+D   A + F ++         E++G+G FG VY+G L    K +I +A+K + +  S +  ++F++E   +G+  H N+++L G   +   ++++ ++M NG+LD +L  N  + T+   Q  G+++G+A G+ YL    E   +HRD+ A N+L++  L  ++ DFGL+R L D  +DP  T  +G    + + APE     K T+++DV+S+G  + EV + G RP
Sbjct:  598 FTYEDPNEAVREFAKEIDVSFVKIEEVIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERP 824          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: EPHB1_MOUSE (Ephrin type-B receptor 1 OS=Mus musculus GN=Ephb1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 74/232 (31.90%), Postives = 132/232 (56.90%), Query Frame = 3
Query:    9 FRYKDLYIATKGFREK---------ELLGSGGFGRVYRGTLP---KSKIEIAVKKI-SHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYL-YNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYDHGTDPQTTHVVG---TLGYLAPEHSRTGKATTSADVFSFGAFLLEV-ACGRRP 647
            F Y+D   A + F ++         E++G+G FG VY+G L    K +I +A+K + +  S +  ++F++E   +G+  H N+++L G   +   ++++ ++M NG+LD +L  N  + T+   Q  G+++G+A G+ YL    E   +HRD+ A N+L++  L  ++ DFGL+R L D  +DP  T  +G    + + APE     K T+++DV+S+G  + EV + G RP
Sbjct:  598 FTYEDPNEAVREFAKEIDVSFVKIEEVIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERP 824          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 71/227 (31.28%), Postives = 109/227 (48.02%), Query Frame = 3
Query:   18 KDLYIATKGFRE----------KELLGSGGFGRVYRGTLPKSKIEIAVKKISHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLYNQP---KVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEVACGRRPIERQ 659
            KDL    K F E           E+LG G FG  Y+ +     + +AVK++  +     KEF  ++  +G + H NLV L+ Y   + E L+V++YM  GSL   L+      +  LNW  R  +  G A  + YLH   +    H ++K+SN+LL      ++ D+ LA +    + P         GY APE +   K +  ADV+SFG  +LE+  G+ P  +Q
Sbjct:  324 KDLTFFVKSFGEFDLDGLLKASAEVLGKGTFGSSYKASFDHGLV-VAVKRL-RDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSR-DATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRID-----GYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQ 542          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: EPHB1_HUMAN (Ephrin type-B receptor 1 OS=Homo sapiens GN=EPHB1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 74/232 (31.90%), Postives = 132/232 (56.90%), Query Frame = 3
Query:    9 FRYKDLYIATKGFREK---------ELLGSGGFGRVYRGTLP---KSKIEIAVKKI-SHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYL-YNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYDHGTDPQTTHVVG---TLGYLAPEHSRTGKATTSADVFSFGAFLLEV-ACGRRP 647
            F Y+D   A + F ++         E++G+G FG VY+G L    K +I +A+K + +  S +  ++F++E   +G+  H N+++L G   +   ++++ ++M NG+LD +L  N  + T+   Q  G+++G+A G+ YL    E   +HRD+ A N+L++  L  ++ DFGL+R L D  +DP  T  +G    + + APE     K T+++DV+S+G  + EV + G RP
Sbjct:  598 FTYEDPNEAVREFAKEIDVSFVKIEEVIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYLA---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERP 824          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: EPHB1_CHICK (Ephrin type-B receptor 1 (Fragment) OS=Gallus gallus GN=EPHB1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 74/232 (31.90%), Postives = 132/232 (56.90%), Query Frame = 3
Query:    9 FRYKDLYIATKGFREK---------ELLGSGGFGRVYRGTLP---KSKIEIAVKKI-SHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYL-YNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYDHGTDPQTTHVVG---TLGYLAPEHSRTGKATTSADVFSFGAFLLEV-ACGRRP 647
            F Y+D   A + F ++         E++G+G FG VY+G L    K +I +A+K + +  S +  ++F++E   +G+  H N+++L G   +   ++++ ++M NG+LD +L  N  + T+   Q  G+++G+A G+ YL    E   +HRD+ A N+L++  L  ++ DFGL+R L D  +DP  T  +G    + + APE     K T+++DV+S+G  + EV + G RP
Sbjct:  598 FTYEDPNEAVREFAKEIDVSFVKIEEVIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYLA---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERP 824          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 3
Query:    9 FRYKDLYIATKGFREKELLGSGGF---GRVYRGTLPKSKIEIAVKKISHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLYNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEVACGR 641
            F + DL  AT  F    ++   G      VY+G L +++  IAVKK +  +    K+F  E   +G+LRH  L  L+GYC    E LLV ++MPN +L K+L++    T+ W  R  V   +A  L Y   E     ++ D+ A  VL D + + RL  FGL +    G    T      L Y  PE+ R G+ T  +  +SFG  LL++  G+
Sbjct:   61 FSFADLKAATNNFSSDNIVSESGEKAPNLVYKGRL-QNRRWIAVKKFTKMAWPEPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVGYYIAEALDYCSTEGRP--LYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYST-----NLAYTPPEYLRNGRVTPESVTYSFGTVLLDLLSGK 266          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: SHKC_DICDI (Dual specificity protein kinase shkC OS=Dictyostelium discoideum GN=shkC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 61/205 (29.76%), Postives = 108/205 (52.68%), Query Frame = 3
Query:   54 KELLGSGGFGRVYRGTLPKSKIEIAVKKISHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLYNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLARL-YDHGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEVACGRRPIERQSQ 665
            +EL+G+G FG+VY+G   +  + + +    +     +  F  E+  + ++ H N+   +G C   G  ++V + +P G+L+  L++Q K+ L    R  + +  ALG+ +LHE    V +HRD+K+SN+L+D  +  ++ DFGL+ L   H      +   GT  Y+APE     +   S+DV+SFG  L E+   + P     +
Sbjct:   27 EELIGTGSFGKVYKGRCRQKAVAVKLLHKQNFDAATLSAFRKEVHLMSKIYHPNICLFMGACTIPGRCVIVTELVPKGNLETLLHDQ-KIQLPLYLRMRMARDAALGINWLHES-NPVFVHRDIKSSNLLVDENMRVKICDFGLSALKQKHKMLKDQSSAKGTPLYMAPEVMMFKEFNESSDVYSFGIVLWEILTRKEPFSHHRE 229          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 69/219 (31.51%), Postives = 111/219 (50.68%), Query Frame = 3
Query:    9 FRYKDLYIATKGFREKELLGSGGFGRVYRGTLPKSKIEIAVKKISHESRQGMKE-FVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQPK------VTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEVACGR 641
            F Y+ L  AT+ F +  L+  G  G ++RG L ++ I + +KKI  + R+G  E +++E+    +  H+ LV  LG+C   + +  LVY +M +G L   L+ + +       +L+W  R  +  G A GL YLH E    ++HRDV+AS++LLD +   RLG    A         + + ++       P  S    A  S DV+ FG  LLE+  G+
Sbjct:  515 FSYEQLLQATEEFNDANLIKRGHSGNLFRGFL-ENGIPVVIKKI--DVREGKSEGYISELELFSKAGHQRLVPFLGHCLENESQKFLVYKFMRHGDLASSLFRKSENEGDGLKSLDWITRLKIALGAAEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEAYAQGDAYQSRISRLLRLPQSSEPSSSGVTNAICSYDVYCFGKVLLELVTGK 730          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: EPB1A_XENLA (Ephrin type-B receptor 1-A OS=Xenopus laevis GN=ephb1-A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 74/241 (30.71%), Postives = 134/241 (55.60%), Query Frame = 3
Query:    9 FRYKDLYIATKGFREK---------ELLGSGGFGRVYRGTLP---KSKIEIAVKKI-SHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYL-YNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYDHGTDPQTTHVVG---TLGYLAPEHSRTGKATTSADVFSFGAFLLEV-ACGRRPIERQSQKRI 674
            F Y+D   A + F ++         E++G+G FG VY+G L    K +I +A+K + +  S +  ++F++E   +G+  H N+++L G   +   ++++ ++M NG+LD +L  N  + T+   Q  G+++G+A G+ YL    E   +HRD+ A N+L++  L  ++ DFGL+R L D  +DP  T  +G    + + A E     K T+++DV+S+G  + EV + G RP    S + +
Sbjct:  599 FTYEDPNEAVREFAKEIDVSFVKIEEVIGAGEFGEVYKGRLKLPSKREISVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAQEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWTMSNQDV 834          
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 67/209 (32.06%), Postives = 94/209 (44.98%), Query Frame = 3
Query:   21 DLYIATKGFREKELLGSGGFGRVYRGTLPKSKIEIAVKKISHESRQGMKEFVAEIVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLYNQPKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEVACGRRP 647
            DL  AT  F    +L  G  G  Y   LP      A+K I   +     E       + R+ H NL  L GYC    + + +Y+ +   +L   L+N    +  WR R+ +  G A  L +LH      ++H +VKA+ +LLD     RL DFGL +L D     Q        GY  PE  R    T  +DV+SFG  LLE+  G++P
Sbjct:  513 DLKAATFNFDRGTMLWEGKSGPTYGAVLPGG-FRAALKVIPSGTTLTDTEVSIAFERLARINHPNLFPLCGYCIATEQRIAIYEDLDMVNLQSLLHNNGDDSAPWRLRHKIALGTARALAFLHHGCIPPMVHGEVKAATILLDSSQEPRLADFGLVKLLDE----QFPGSESLDGYTPPEQERNASPTLESDVYSFGVVLLELVSGKKP 716          
The following BLAST results are available for this feature:
BLAST of FC931420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EPHB1_RAT1.246e-2231.90Ephrin type-B receptor 1 OS=Rattus norvegicus GN=E... [more]
EPHB1_MOUSE1.246e-2231.90Ephrin type-B receptor 1 OS=Mus musculus GN=Ephb1 ... [more]
Y5659_ARATH1.627e-2231.28Probable inactive receptor kinase At5g16590 OS=Ara... [more]
EPHB1_HUMAN1.627e-2231.90Ephrin type-B receptor 1 OS=Homo sapiens GN=EPHB1 ... [more]
EPHB1_CHICK1.627e-2231.90Ephrin type-B receptor 1 (Fragment) OS=Gallus gall... [more]
Y4523_ARATH3.625e-2233.18Probable serine/threonine-protein kinase At4g35230... [more]
SHKC_DICDI3.625e-2229.76Dual specificity protein kinase shkC OS=Dictyostel... [more]
Y2165_ARATH4.734e-2231.51Probable LRR receptor-like serine/threonine-protei... [more]
EPB1A_XENLA4.734e-2230.71Ephrin type-B receptor 1-A OS=Xenopus laevis GN=ep... [more]
Y5815_ARATH6.183e-2232.06Probably inactive leucine-rich repeat receptor-lik... [more]

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Properties
Property NameValue
Genbank descriptionC34104H09EF PostHarvP1 Citrus clementina cDNA clone C34104H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931420 ID=FC931420; Name=FC931420; organism=Citrus clementina; type=EST; length=700bp
CTCACAGGTTCAGGTACAAAGATCTTTACATTGCCACTAAAGGGTTCAGA
GAGAAAGAACTGCTAGGCAGCGGCGGATTTGGGAGAGTGTATAGGGGTAC
ACTGCCCAAATCCAAAATTGAGATTGCAGTGAAGAAGATTTCTCACGAAT
CCAGACAGGGGATGAAGGAATTCGTTGCGGAGATTGTGAGCATCGGTCGC
CTCAGGCACCGGAATTTAGTGCAACTCTTGGGATATTGCCGGCGTAAAGG
GGAGCTGCTTTTGGTCTATGATTACATGCCTAATGGAAGCTTAGACAAAT
ACCTCTATAACCAACCAAAAGTCACACTAAACTGGAGACAAAGATATGGA
GTCATCAAAGGTGTCGCATTAGGCCTGTTATATTTGCACGAAGAATGGGA
ACAAGTTGTGATTCACAGAGATGTTAAGGCAAGTAACGTGTTGCTTGATG
GTGAATTAAACGGAAGATTGGGAGATTTCGGCCTGGCAAGATTATACGAC
CACGGAACAGATCCACAAACAACGCACGTTGTGGGAACACTTGGGTACCT
TGCCCCTGAGCACAGTCGGACAGGCAAGGCCACCACAAGCGCTGATGTGT
TTTCATTTGGGGCATTTTTGCTTGAAGTTGCTTGCGGGAGAAGGCCAATT
GAGAGACAGAGCCAGAAGAGAATTTATTTTGGTTGATTGCGTGNTTGACT
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