FC931420

Overview
NameFC931420
Unique NameFC931420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_RABIT (Hepatocyte growth factor receptor OS=Oryctolagus cuniculus GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1083 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1277
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_PONAB (Hepatocyte growth factor receptor OS=Pongo abelii GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1082 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1276
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_PIG (Hepatocyte growth factor receptor OS=Sus scrofa GN=MET PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 107/202 (52.97%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTL---PKSKIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL      KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1082 EVIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1276
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_PAPAN (Hepatocyte growth factor receptor OS=Papio anubis GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1082 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1276
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_PANTR (Hepatocyte growth factor receptor OS=Pan troglodytes GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1082 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1276
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_MICMU (Hepatocyte growth factor receptor OS=Microcebus murinus GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1083 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1277
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_HYLLE (Hepatocyte growth factor receptor OS=Hylobates leucogenys GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1082 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1276
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_HUMAN (Hepatocyte growth factor receptor OS=Homo sapiens GN=MET PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1082 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1276
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_GORGO (Hepatocyte growth factor receptor OS=Gorilla gorilla gorilla GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1082 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1276
[Close]
BLAST of FC931420 vs. ExPASy Swiss-Prot
Match: MET_EULMM (Hepatocyte growth factor receptor OS=Eulemur macaco macaco GN=MET PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3 
Query:   57 ELLGSGGFGRVYRGTLPKS---KIEIAVKKISHESRQG-MKEFVAEIVSIGRLRHRNLVQLLGYC-RRKGELLLVYDYMPNGSLDKYLYNQ---PKVTLNWRQRYGVIKGVALGLLYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLAR-LYD--HGTDPQTTHVVGTLGYLAPEHSRTGKATTSADVFSFGAFLLEV 629
            E++G G FG VY GTL  +   KI  AVK ++  +  G + +F+ E + +    H N++ LLG C R +G  L+V  YM +G L  ++ N+   P V    +   G    VA G+ YL  +     +HRD+ A N +LD +   ++ DFGLAR +YD  + +    T     + ++A E  +T K TT +DV+SFG  L E+
Sbjct: 1083 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV----KDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 1277
The following BLAST results are available for this feature:
BLAST of FC931420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MET_RABIT4.585e-1734.65Hepatocyte growth factor receptor OS=Oryctolagus c... [more]
MET_PONAB4.585e-1734.65Hepatocyte growth factor receptor OS=Pongo abelii ... [more]
MET_PIG4.585e-1734.65Hepatocyte growth factor receptor OS=Sus scrofa GN... [more]
MET_PAPAN4.585e-1734.65Hepatocyte growth factor receptor OS=Papio anubis ... [more]
MET_PANTR4.585e-1734.65Hepatocyte growth factor receptor OS=Pan troglodyt... [more]
MET_MICMU4.585e-1734.65Hepatocyte growth factor receptor OS=Microcebus mu... [more]
MET_HYLLE4.585e-1734.65Hepatocyte growth factor receptor OS=Hylobates leu... [more]
MET_HUMAN4.585e-1734.65Hepatocyte growth factor receptor OS=Homo sapiens ... [more]
MET_GORGO4.585e-1734.65Hepatocyte growth factor receptor OS=Gorilla goril... [more]
MET_EULMM4.585e-1734.65Hepatocyte growth factor receptor OS=Eulemur macac... [more]

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Properties
Property NameValue
Genbank descriptionC34104H09EF PostHarvP1 Citrus clementina cDNA clone C34104H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931420 ID=FC931420; Name=FC931420; organism=Citrus clementina; type=EST; length=700bp
CTCACAGGTTCAGGTACAAAGATCTTTACATTGCCACTAAAGGGTTCAGA
GAGAAAGAACTGCTAGGCAGCGGCGGATTTGGGAGAGTGTATAGGGGTAC
ACTGCCCAAATCCAAAATTGAGATTGCAGTGAAGAAGATTTCTCACGAAT
CCAGACAGGGGATGAAGGAATTCGTTGCGGAGATTGTGAGCATCGGTCGC
CTCAGGCACCGGAATTTAGTGCAACTCTTGGGATATTGCCGGCGTAAAGG
GGAGCTGCTTTTGGTCTATGATTACATGCCTAATGGAAGCTTAGACAAAT
ACCTCTATAACCAACCAAAAGTCACACTAAACTGGAGACAAAGATATGGA
GTCATCAAAGGTGTCGCATTAGGCCTGTTATATTTGCACGAAGAATGGGA
ACAAGTTGTGATTCACAGAGATGTTAAGGCAAGTAACGTGTTGCTTGATG
GTGAATTAAACGGAAGATTGGGAGATTTCGGCCTGGCAAGATTATACGAC
CACGGAACAGATCCACAAACAACGCACGTTGTGGGAACACTTGGGTACCT
TGCCCCTGAGCACAGTCGGACAGGCAAGGCCACCACAAGCGCTGATGTGT
TTTCATTTGGGGCATTTTTGCTTGAAGTTGCTTGCGGGAGAAGGCCAATT
GAGAGACAGAGCCAGAAGAGAATTTATTTTGGTTGATTGCGTGNTTGACT
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