FC931435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH2_PONAB (Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii GN=HNRNPH2 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 67/225 (29.78%), Postives = 96/225 (42.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH2_MOUSE (Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus GN=Hnrnph2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 67/225 (29.78%), Postives = 96/225 (42.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH2_HUMAN (Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens GN=HNRNPH2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 67/225 (29.78%), Postives = 96/225 (42.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH2_BOVIN (Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 77.411 bits (189), Expect = 8.737e-14 Identity = 67/225 (29.78%), Postives = 97/225 (43.11%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFH--GSPPPSRAKRYNDKDQMEHT-------------EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND + GS R + Y +H + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDQNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15 Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P ATGE +VEF Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15 Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P ATGE +VEF Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH1_RAT (Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus GN=Hnrnph1 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF + EIVQFF +I+ + I + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 78.1814 bits (191), Expect = 5.122e-14 Identity = 67/225 (29.78%), Postives = 97/225 (43.11%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C++ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15 Identity = 57/171 (33.33%), Postives = 83/171 (48.54%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRP*W*ATGEAYVEF 727 VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E+V FF + I ++ I P TG+A+V F Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLF 377
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15 Identity = 57/171 (33.33%), Postives = 83/171 (48.54%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRP*W*ATGEAYVEF 727 VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E+V FF + I ++ I P TG+A+V F Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLF 376
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15 Identity = 57/171 (33.33%), Postives = 83/171 (48.54%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRP*W*ATGEAYVEF 727 VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E+V FF + I ++ I P TG+A+V F Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLF 377 The following BLAST results are available for this feature:
BLAST of FC931435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931435 ID=FC931435; Name=FC931435; organism=Citrus clementina; type=EST; length=732bpback to top |