FC931438

Overview
NameFC931438
Unique NameFC931438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: C71AN_ARATH (Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=CYP71A23 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 37/129 (28.68%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  160 PGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQEN 546
            P P   P+IGNL +L   PH+SL  L+  +GP+M L FG V  +V S+A  A+++L+  D  F +R          +    M   P    WR ++ +   H  S++ + + Q +R+++I  ++  ++++
Sbjct:   31 PSPPRLPLIGNLHQLSQHPHRSLCYLSHRYGPLMLLHFGSVPVIVASTAEAARDVLKTHDRVFASRPRSKIFEKLLYKSRNMASAPYGEYWRQMKSVSVLHLLSNKMVRSFQDVRQEEITLMMETIRKS 159          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: C71BH_ARATH (Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=CYP71B17 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 45/178 (25.28%), Postives = 82/178 (46.07%), Query Frame = 1
Query:   97 ILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNR--TIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIF 624
            I  V+L       K     LPP P   PVIGNL ++G+ PH+S  +LA+  G +M L  G V   V SS   A+E+L+  D   C+R   +   + + G  +  + + P    W+  R+      F S++L +  +++  +   L+  + E+    + + + +  F    +++    F
Sbjct:   11 ITFVSLTIVGCKIKRSIWNLPPSPPKLPVIGNLHQVGELPHRSFRRLAERTGHVMLLHLGFVPVTVISSREAAEEVLRTHDLDCCSRPNLVGSRLISRGFKD--LNFTPYGEEWKERRRFLVGELFCSKKLQSFIYIKEVECNFLVKKLSESAVDQSPVDLSKTLFWLAASILFRVAF 186          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 52/173 (30.06%), Postives = 85/173 (49.13%), Query Frame = 1
Query:   55 MDMVSCVPWLLFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGT 561
            MD++     LL  +  ++A  + S+  +    +LPPGP P P+ GN L++GD   H++L  LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   +     +   ++  V++N +A T
Sbjct:    1 MDLLLVEKTLLALFAAIIASIFISK-LRGKRFKLPPGPVPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDVKKNPKAAT 169          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 52/163 (31.90%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   85 LFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGT 561
            LF+ I+V ++    RG K    +LPPGP P PV GN L++GD   H++L+  AK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   ++   ++   ++  V++N  + T
Sbjct:   13 LFAAIIVASIVSKLRGKKF---KLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAARVVEDVKKNPESAT 169          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  151 RLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQH 498
            +LPPGP P P+ GN L++GD   H++L +LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   +H
Sbjct:   32 KLPPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRH 148          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: C71DI_MENSP (Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 42/161 (26.09%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   49 LKMDMVSCVPWLLFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLL 528
            +++D++S +  L+ ++I+ + +N + +      + LPP P   PVIG+L  L G  P      +A+ +GP+  ++ G+V +VV SSA  AK+ ++  D +F +R          + +  + + P    WR +R+IC +   S + + +  ++R+++I+ L+
Sbjct:    1 MELDLLSAIIILVATYIVSLLINQWRKS--KSQQNLPPSPPKLPVIGHLHFLWGGLPQHVFRSIAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLI 159          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: C71DI_MENGR (Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 42/161 (26.09%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   49 LKMDMVSCVPWLLFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLL 528
            +++D++S +  L+ ++I+ + +N + +      + LPP P   PVIG+L  L G  P      +A+ +GP+  ++ G+V +VV SSA  AK+ ++  D +F +R          + +  + + P    WR +R+IC +   S + + +  ++R+++I+ L+
Sbjct:    1 MELDLLSAIIILVATYIVSLLINQWRKS--KSQQNLPPSPPKLPVIGHLHFLWGGLPQHVFRSIAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLI 159          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  151 RLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQH 498
            +LPPGP P P+ GN L++GD   H++L  LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   +H
Sbjct:   32 KLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRH 148          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 53/163 (32.52%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   85 LFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGT 561
            LF+ I+   L    RG K    +LPPGP P P+ GN L++GD   H++L  LAK  G I+ L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   ++    +   ++  V++N  A T
Sbjct:   13 LFAAIIGAILISKLRGKKF---KLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEAEAAAVVDDVKKNPAAAT 169          
BLAST of FC931438 vs. ExPASy Swiss-Prot
Match: C82A1_PEA (Cytochrome P450 82A1 (Fragment) OS=Pisum sativum GN=CYP82A1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 41/147 (27.89%), Postives = 72/147 (48.98%), Query Frame = 1
Query:   91 SWILVVALNYFSRGFKSGSRRLPPG--PTPYPVIGNL--LELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQ 519
            ++I +++L +F   F   S    P      +P++G+L  +     PHK+L  L   +GPI ++K G    +V S+  +AKE     D    +R  P A+    +++  + W P    WR LRKI      S+R+++   H+R  ++Q
Sbjct:   12 AFISLISLLFFLFRFSKVSHTKEPPIISGSWPLLGHLPLMRNTQTPHKTLGALVDKYGPIFTIKLGATNALVLSNWELAKECFTKNDIVVSSRPKPVAVELMSYNQAFIGWAPYGAYWRQLRKIVTLEILSNRRIELLSHIRVSEVQ 158          
The following BLAST results are available for this feature:
BLAST of FC931438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
C71AN_ARATH2.044e-1228.68Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=C... [more]
C71BH_ARATH4.553e-1225.28Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=C... [more]
TCMO_ZINEL5.947e-1230.06Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_CATRO5.947e-1231.90Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_PHAAU7.767e-1235.83Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
C71DI_MENSP7.767e-1226.09Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D1... [more]
C71DI_MENGR7.767e-1226.09Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D... [more]
TCMO_SOYBN1.325e-1135.83Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_HELTU1.325e-1132.52Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
C82A1_PEA1.325e-1127.89Cytochrome P450 82A1 (Fragment) OS=Pisum sativum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105B03EF PostHarvP1 Citrus clementina cDNA clone C34105B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931438 ID=FC931438; Name=FC931438; organism=Citrus clementina; type=EST; length=707bp
GACACCTGAATTTGGTGTTTACAGAGCTTCAAACAAAAGAGAGCGAGATT
AAAGATGGATATGGTAAGCTGCGTACCATGGCTTCTATTCTCGTGGATTT
TGGTCGTCGCTTTAAATTACTTTTCAAGAGGATTCAAATCTGGATCCAGA
AGGCTTCCACCGGGACCGACGCCTTATCCGGTGATCGGAAACCTCCTGGA
ACTCGGCGACAAACCTCACAAGTCACTTGCTAAACTTGCCAAGATTCATG
GCCCCATAATGAGTCTAAAATTTGGCCAGGTGACCACAGTTGTCTTTTCT
TCTGCAGCCATGGCCAAAGAAATCCTTCAAAATCAAGACACATCTTTCTG
TAATCGAACAATCCCAGACGCAATCTACGCCCACGGCCATCATGAATTCG
GGATGCCCTGGCTGCCTGTGGCGACACTGTGGAGAAATCTTCGAAAAATA
TGCAACTCACATGCTTTCTCTAGTCGCCAACTCGATGCCAATCAGCACCT
TCGGCGTAAGAAAATCCAAGATCTTCTAGCTTATGTCCAAGAAAATTGCC
GTGCAGGTACAGCAATACATATTGGCCAAGCTGCTTTCGACACTACGCTT
AATTTGATATCCAACACAATTTTTTCTATTGACTTGGCTGATCCCACATC
AAAAACTGCGCGAGAGTTTAAGCAACAAATTGGGGTATGATGGAAGAGCT
GGNAAGC
back to top