FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEFL (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens GN=sthA PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 60/181 (33.15%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL++ GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEE4 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas entomophila (strain L48) GN=sthA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 60/181 (33.15%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCPNGVVEKLVAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHRC_BRARP (Glutathione reductase, cytosolic OS=Brassica rapa subsp. pekinensis GN=GR1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 52/179 (29.05%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            A +   +L       E+ G +GGTC+  GC+P K L++ +  Y   +    ++G + + +V+ +   ++ +K   +  L    + L     V   +G G  + P+EV V  I+G       K+I+IATGS  +  ++PG     +  ++S  AL+L E PK+ +V+G GYI +E  S+W
Sbjct:   52 AKVGICELPFHPISSEEIGGVGGTCVIRGCVPKKILVYGA-TYGGELEDARNYGWEINGNVDFNWKKLLQKKTDEILRLNNIYKRLLANAAVKLYEGEGRIVGPNEVEVRQIDGTKISYTAKHILIATGSRAQKPNIPG----HELAITSDEALSLEEFPKRAIVLGGGYIAVEFASIW 225          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEPK (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain KT2440) GN=sthA PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 59/181 (32.60%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K ++       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVIAKQVASRTGYYARNRVDVFVGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEP1 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sthA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 59/181 (32.60%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K ++       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVIAKQVASRTGYYARNRVDVFVGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHR_HUMAN (Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16
Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS-----DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE         +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct:   79 SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 249          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHRP_SPIOL (Glutathione reductase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16
Identity = 50/179 (27.93%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            A +   +L       E  G +GGTC+  GC+P K L++ +    E +    ++G + +  ++ +   ++ +K   +  L    + L     V   +G G+ + P+EV V  ++G       K+I+IATGS  +  ++PG    ++  ++S  AL+L E PK++V++G GYI +E  S+W
Sbjct:   39 AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGE-LEDAKNYGWELNEKIDFNWKKLLQKKTDEIIRLNNIYKRLLSNAGVKLYEGEGKIVGPNEVQVTQLDGTKLSYSAKHILIATGSRAQRPNIPG----QELAITSDEALSLEEFPKRVVILGGGYISVEFASIW 212          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 49/160 (30.63%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  247 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 723
            T +  R  LGGTC+NV CIP K L+H + +  +A+    ++G     +++ D   M       + +L  G     ++ KVTY   YG+F+ P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE
Sbjct:   47 TPLGTRWGLGGTCVNVSCIPKK-LMHQAALLGQALRDSRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALE 204          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_SERP5 (Soluble pyridine nucleotide transhydrogenase OS=Serratia proteamaculans (strain 568) GN=sthA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 49/176 (27.84%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +   +  +  ++    P ++   D  ++  TR  +G +++N+     G   FI  + VSV  ++G    ++  +I+IA GS   +   +  +  RI +S   L LN  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYNNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYNNSR--TLSATFPDILRHADNVINQQTRMRQGFYERNQCKLFAGDARFIDANTVSVSYMDGTQDTIRADHIVIACGSRPYNPSSVDFNHPRIYNSDSILELNHEPRHVIIYGAGVIGCEYASIF 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_MARMS (Soluble pyridine nucleotide transhydrogenase OS=Marinomonas sp. (strain MWYL1) GN=sthA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 51/179 (28.49%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+ AA+ G +   IE    +GG+C ++G IPSKAL H+     + + +F ++ +     E      P ++ + ++ +     G    + +N++    G G+F   + + V+T E G  +++ K ++IATGS       I     RI  S   L+L+  P+ L++ GAG IG E  S++
Sbjct:   20 AAMSAAKAGKRVAVIEASSQVGGSCTHLGTIPSKALRHAV----KEIIAFNTNPMFRDIGEPRWFSFPKVLDRANRVIDKQVMGRTEYYARNRIDIYFGRGKFKDANTIEVNTYEKGPELLEAKKVVIATGSRPYRPANIDFSHPRIYCSDTILSLSHTPRSLIIYGAGVIGCEYASIF 194          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
STHA_PSEFL2.533e-1633.15Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEE43.308e-1633.15Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHRC_BRARP3.308e-1629.05Glutathione reductase, cytosolic OS=Brassica rapa ... [more]
STHA_PSEPK4.320e-1632.60Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEP14.320e-1632.60Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHR_HUMAN5.643e-1629.44Glutathione reductase, mitochondrial OS=Homo sapie... [more]
GSHRP_SPIOL5.643e-1627.93Glutathione reductase, chloroplastic (Fragment) OS... [more]
TRXR1_PIG7.369e-1630.63Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
STHA_SERP57.369e-1627.84Soluble pyridine nucleotide transhydrogenase OS=Se... [more]
STHA_MARMS9.625e-1628.49Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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