FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHR_PSEAE (Glutathione reductase OS=Pseudomonas aeruginosa GN=gor PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 51/178 (28.65%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA  AA  G +    E R  LGGTC+NVGC+P K L++ +H + E      ++G      + D   ++  K++ +  L      L   + VT ++G+   +    V VD           K+I++ATG    V  +PG    ++  ++S  A  L  +P++++V+G GYI +E  S++
Sbjct:   19 AARFAAGFGARVAVAESR-YLGGTCVNVGCVPKKLLVYGAH-FSEDFEQARAYGWSAGEAQFDWATLIGNKNREIQRLNGIYRNLLVNSGVTLLEGHARLLDAHSVEVD-----GQRFSAKHILVATGGWPQVPDIPG----KEHAITSNEAFFLERLPRRVLVVGGGYIAVEFASIF 185          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHRC_PEA (Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 52/179 (29.05%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            A +   +L       E  G +GGTC+  GC+P K L++ +  Y   +    + G + + +V+ +   ++ +K   ++ L    + L     V   +G G+  SP+EV V  ++G       K+I+IATGS  +  ++PG  +     ++S  AL+L E PK+ V++G GYI +E  S+W
Sbjct:   48 AKVGICELPFHPISSETIGGVGGTCVIRGCVPKKILVYGAS-YGGELQDARNFGWELNENVDFNWKKLLQKKTDEINRLNGIYKRLLSNAGVKLFEGEGKIASPNEVEVTQLDGTKLSYSAKHILIATGSRAQRPNIPGQELG----ITSDEALSLEEFPKRAVILGGGYIAVEFASIW 221          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHRC_ARATH (Glutathione reductase, cytosolic OS=Arabidopsis thaliana GN=At3g24170 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 52/179 (29.05%), Postives = 90/179 (50.28%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            A +   +L       E+ G +GGTC+  GC+P K L++ +  Y   +    ++G + +  V+     ++ +K   +  L    + L     V   +G G  + P+EV V  I+G       K+I+IATGS  +  ++PG     +  ++S  AL+L E PK+ +V+G GYI +E  S+W
Sbjct:   49 AKVGICELPFHPISSEEIGGVGGTCVIRGCVPKKILVYGA-TYGGELEDAKNYGWEINEKVDFTWKKLLQKKTDEILRLNNIYKRLLANAAVKLYEGEGRVVGPNEVEVRQIDGTKISYTAKHILIATGSRAQKPNIPG----HELAITSDEALSLEEFPKRAIVLGGGYIAVEFASIW 222          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: YKGC_ECOLI (Probable pyridine nucleotide-disulfide oxidoreductase ykgC OS=Escherichia coli (strain K12) GN=ykgC PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 57/180 (31.67%), Postives = 89/180 (49.44%), Query Frame = 1
Query:  214 AIKAAQLGLKTTCIEKRGAL-GGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            A+  A+ G +   IE+  A+ GGTC+N+GCIP+K L+H +  +                   D    + +K++ V+ L  +    L     +  + G  EFI+   + V   E GN  + G+ I I TG+   V  +PGIT     +  STG L L E+P  L ++G GYIG+E  S++A
Sbjct:   19 AVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQH------------------TDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPE-GNLEIHGEKIFINTGAQTVVPPIPGIT-TTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFA 178          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHR_ASHGO (Glutathione reductase OS=Ashbya gossypii GN=GLR1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  220 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-----FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            +AA  G KT  IE + ALGGTC+NVGC+P K + ++S + H  +H+          +    +  +      +++  V  L    E    K  V YV G+  F S  +V V   +         +I+IATG +     GI   E   V S G   L E PKK+V+ G+GYI  E   V+
Sbjct:   39 RAASYGAKTVLIEGK-ALGGTCVNVGCVPKKVMWYASDLAHRLLHARDYGLLQEVDISKEKLHFNWKEFAGKRNAYVERLNGIYERNLAKEGVEYVHGWARFNSEGQVEVTRPDQTTEKYTADHILIATGGEPVLPEGIPGAEYG-VDSDGFFRLEEQPKKVVISGSGYIATEFAGVF 214          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSESM (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. tomato GN=sthA PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 55/180 (30.56%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS     + +  F ++ +  +  E      P ++   +  +S         + +N+V    G G F   + V+V    G    +    IIIATGS       I    KRI  S   L+L   P+KL++ GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRREVGGNCTHLGTIPSKALRHSV----KQIIQFNTNPMFRAIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSVNVVCANGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PHOPR (Soluble pyridine nucleotide transhydrogenase OS=Photobacterium profundum GN=sthA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 50/176 (28.41%), Postives = 79/176 (44.89%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + GL    IE+  ++GG C + G IPSKAL H+     E   +   +    SS+      ++      V+  TR  +G + +NK + + G   FI    V V   +    +      +IATGS      G+  D  R+  S   L L   P+ +++ GAG IG E  S++
Sbjct:   24 AAMGLTKAGLNVAVIERENSVGGGCTHWGTIPSKALRHAVSRIIEYNQN-PLYCKNNSSLHSTFSQILGHAQDVVNKQTRMRQGFYDRNKCSLIFGEASFIDAHTVRVKNADNSTDLYSADKFVIATGSRPYHPEGVDFDHSRVYDSDSILQLEHDPRHIIIYGAGVIGSEYASIF 198          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHR_DICDI (Glutathione reductase OS=Dictyostelium discoideum GN=gsr PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  274 GGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL--PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            GGTC+NVGC+P K + ++S +  E +++  S+G  F   +V    P +   +D+ +  L    +    K+ +  + GYG F  P E+ V+   G        +I+IA G    V  +PG  +     ++S G   L ++PK  +V+GAGYI +E+  V
Sbjct:   47 GGTCVNVGCVPKKVMWNTSFI-KEMINAAPSYGFDFGGQQVKFNWPTIKKARDEYIKRLNGIYDSNLAKDNIVRINGYGRFSGPKEIQVNGANGEKYTAD--HILIAAGGRPTVPDVPGKELG----ITSDGFFELEDLPKSTLVVGAGYIAVELAGV 197          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = 1
Query:  214 AIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 723
            A +AA LG K   ++            LGGTC+NVGCIP K L+H + +   A+     +G +++  V+ +  AM       + +L  G     ++  VTYV  +GEF+   ++     +G  T       +IATG   + L GI  D++  ++S    +L   P   +V+GA Y+GLE
Sbjct:  226 AKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKK-LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYL-GIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLE 402          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_VIBVY (Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus (strain YJ016) GN=sthA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + GLK   +EK  ++GG C + G IPSKAL H+     E  +S        SS+      ++      +   TR  +G + +N+   + G   F     +SV   +G   V      +IATGS       +  + +RI  S   L+L   P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLTKAGLKVAVVEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCKNNSSLHATFSTILGHAKSVIDKQTRLRQGFYDRNQCQLIFGTARFTDAHTISVTQNDGTEEVYTADKFVIATGSRPYQPADVDFNHERIYDSDSILSLKHDPRHIIIYGAGVIGCEYASIF 195          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
GSHR_PSEAE9.625e-1628.65Glutathione reductase OS=Pseudomonas aeruginosa GN... [more]
GSHRC_PEA9.625e-1629.05Glutathione reductase, cytosolic OS=Pisum sativum ... [more]
GSHRC_ARATH9.625e-1629.05Glutathione reductase, cytosolic OS=Arabidopsis th... [more]
YKGC_ECOLI1.257e-1531.67Probable pyridine nucleotide-disulfide oxidoreduct... [more]
GSHR_ASHGO1.257e-1532.02Glutathione reductase OS=Ashbya gossypii GN=GLR1 P... [more]
STHA_PSESM6.239e-1530.56Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PHOPR6.239e-1528.41Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
GSHR_DICDI6.239e-1530.38Glutathione reductase OS=Dictyostelium discoideum ... [more]
TRXR3_MOUSE8.148e-1530.17Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
STHA_VIBVY8.148e-1528.41Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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