FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_VIBVU (Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus GN=sthA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + GLK   +EK  ++GG C + G IPSKAL H+     E  +S        SS+      ++      +   TR  +G + +N+   + G   F     +SV   +G   V      +IATGS       +  + +RI  S   L+L   P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLTKAGLKVAVVEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCKNNSSLHATFSTILGHAKSVIDKQTRLRQGFYDRNQCQLIFGTARFTDAHTISVTQNDGTEEVYTADKFVIATGSRPYQPADVDFNHERIYDSDSILSLKHDPRHIIIYGAGVIGCEYASIF 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEU2 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=sthA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 54/180 (30.00%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS     + +  F ++ +  +  E      P ++   +  +S         + +N+V    G G F   + ++V    G    +    IIIATGS       I    KRI  S   L+L   P+KL++ GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSV----KQIIQFNTNPMFRAIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSINVVCTNGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEAE (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa GN=sthA PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 51/180 (28.33%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEAB (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=sthA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 51/180 (28.33%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEA8 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=sthA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 51/180 (28.33%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEA7 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=sthA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 51/180 (28.33%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P++L++ GAG IG E  S+++
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSE14 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=sthA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 55/180 (30.56%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS     + +  F ++ +  +  E      P ++   +  +S         + +N+V    G G F   + V+V    G    +    IIIATGS       I    KRI  S   L+L   P+KL++ GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSV----KQIIQFNTNPMFRAIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSVNVVCSNGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHRP_TOBAC (Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 50/178 (28.09%), Postives = 82/178 (46.07%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            A++   +L   T   +  G +GGTC+  GC+P K L+++S   HE   S             D   ++A K+  +  LT   + + K   VT ++G G+ + P  V VD       +   KNI+I+ G    +  +PG     +  + S  AL L   P K+ ++G GYI LE   ++
Sbjct:  103 ASVAVCELPFSTISSDSTGGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYDVEPRFDWSTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKVVDPHTVDVD-----GKLYSAKNILISVGGRPFIPDIPG----SEYAIDSDAALDLPTKPNKIAIVGGGYIALEFAGIF 271          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_HAHCH (Soluble pyridine nucleotide transhydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=sthA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 49/176 (27.84%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+ AA+ G +   IE +  +GG C ++G IPSKAL H+     +   +     +         P ++   ++ +    +     + +N+V   +G   FI  + + V     G  V+ GK I+IATGS       +    +RI +S   L L+  P+ L++ GAG IG E  S++
Sbjct:   20 AAMNAAKHGKRVAVIEDKSQVGGNCTHMGTIPSKALRHAVKQIIQFNTNTMFRDIG-EPRWFSFPRVLQNAERVIGKQVKIRTQFYARNRVDLYRGRASFIDENRIEVRGGLNGKEVLYGKQIVIATGSRPYLPEDVDFTHRRIYNSDSILKLSHTPRTLIIYGAGVIGCEYASIF 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHR_STRTR (Glutathione reductase OS=Streptococcus thermophilus GN=gor PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 55/178 (30.90%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            +A +AA  G K    E +  +GGTC+NVGC+P K + + + +  E +H +A  +G   +    D   + A +   +  +    E  F  N V  V  Y  F+ P      T+E    +    +I+IATG      ++PG     +  ++S G   L+EVPK+  VIGAGYI +E+  V
Sbjct:   19 SANRAAMHGAKVILFEGK-EVGGTCVNVGCVPKKVMWYGAQV-AETLHRYAGEYGFDVTINNFDFATLKANRQAYIDRIHGSFERGFDSNGVERVYEYARFVDP-----HTVEVAGELYTAPHILIATGGHPLYPNIPG----SEYGITSDGFFELDEVPKRTAVIGAGYIAVEVAGV 185          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
STHA_VIBVU8.148e-1528.41Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_PSEU28.148e-1530.00Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEAE8.148e-1528.33Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEAB8.148e-1528.33Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA88.148e-1528.33Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA78.148e-1528.33Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSE148.148e-1530.56Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHRP_TOBAC8.148e-1528.09Glutathione reductase, chloroplastic (Fragment) OS... [more]
STHA_HAHCH1.064e-1427.84Soluble pyridine nucleotide transhydrogenase OS=Ha... [more]
GSHR_STRTR1.064e-1430.90Glutathione reductase OS=Streptococcus thermophilu... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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