FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  271 LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 723
            LGGTC+NVGCIP K L+H + +  +A+      G +++  V  +   M       +S+L  G     ++  V YV  YGEF+   ++     +G  T       +IATG   + L GI  D++  ++S    +L   P K +V+GA Y+ LE
Sbjct:  310 LGGTCVNVGCIPKK-LMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYL-GIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALE 459          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PHOLL (Soluble pyridine nucleotide transhydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=sthA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 52/180 (28.89%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE----AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G     IE+   +GG C + G IPSKAL H+     E     ++S  S  ++ S  E+     + + +  ++  TR  +G +++N      G   FI    VSV   +  + ++    IIIATGS     P +     RI +S   L L+  P+ +++ GAG IG E  S++
Sbjct:   20 AAMGLVKQGKSVAVIERYNNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDNSRVLRSSFAEI-----LRRAEMVINQQTRMRQGFYERNGCRMFSGEATFIDDHRVSVRYADDNHDILSADKIIIATGSRPYCPPDVDFTHSRIYNSDSILKLDHEPRHVIIYGAGVIGCEYASIF 194          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TYTR_TRYCO (Trypanothione reductase OS=Trypanosoma congolense GN=TPR PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 51/166 (30.72%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  268 ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVKGYGEFISPSEVSVDTIEGGNTVVK----GKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            ALGGTC+NVGC+P K L+ +   Y + +   A  G +F  S+++ +   ++A K+ AV ++ +  E +FK  + + +  G+G     + V+V       + VK     ++IIIATGS   +  +PGI    +  +SS  A  L E P++++ +G G+I +E   ++
Sbjct:   47 ALGGTCVNVGCVPKK-LMVTGAQYMDQLRESAGFGWEFDASTIKANWKTLIAAKNAAVLDINKSYEDMFKDTEGLEFFLGWGALEQKNVVTVREGADPKSKVKERLQAEHIIIATGSWPQMLKIPGI----EHCISSNEAFYLEEPPRRVLTVGGGFISVEFAGIF 207          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TYTR_CRIFA (Trypanothione reductase OS=Crithidia fasciculata GN=TPR PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  268 ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVKGYGEFISPSEVSVDTIEGGNTVV----KGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            ALGGTC+NVGC+P K ++  ++ Y + +   A  G +    SV  +  A++A K+KAVS +    EG+F   + +T+ +G+G       V V      N+ V      + I++ATGS  + L GI  D+   ++S  A  L+E PK+ + +G GYI +E   ++
Sbjct:   47 ALGGTCVNVGCVPKKLMVTGAN-YMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHL-GIEGDD-LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIF 207          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TRXR1_CAEEL (Thioredoxin reductase 1 OS=Caenorhabditis elegans GN=trxr-1 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 53/183 (28.96%), Postives = 86/183 (46.99%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 723
            AA +A++LG K  C++            LGGTC+NVGCIP K L+H + +   ++H    +G K     VE     +       +++L  G     ++  VTY+  YGEF  P E+S    +     +     +I+TG   K   +PG+   ++  ++S     L   P K + +GA Y+ LE
Sbjct:  187 AAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKK-LMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGV---KEYTITSDDLFQLPYSPGKTLCVGASYVSLE 365          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHRC_ORYSJ (Glutathione reductase, cytosolic OS=Oryza sativa subsp. japonica GN=GRC2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 48/179 (26.82%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            A +   +L       + +G  GGTC+  GC+P K L++ S    E      + G + +  +  +   ++  K + +  L    + +   + VT ++G G  +    V V   +G       K+I+IATGS  +  ++PG    ++  ++S  AL+L E+PK+ V++G GYI +E  S+W
Sbjct:   46 AKVAICELPFHPISSDWQGGHGGTCVIRGCVPKKILVYGSSFRGE-FEDAKNFGWEINGDINFNWKRLLENKTQEIVRLNGVYQRILGNSGVTMIEGAGSLVDAHTVEVTKPDGSKQRYTAKHILIATGSRAQRVNIPG----KELAITSDEALSLEELPKRAVILGGGYIAVEFASIW 219          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_VIBSL (Soluble pyridine nucleotide transhydrogenase OS=Vibrio splendidus (strain LGP32) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 50/176 (28.41%), Postives = 78/176 (44.32%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + GL    IEK  ++GG C + G IPSKAL H+     E  +S         S+      ++      +   TR  +G + +N+ T V G   FI    +SV   +G          +IATGS       +    +R+  S   L+L   P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLTKAGLNVAIIEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCQNNKSIHSTFSNILGHAKSVIDKQTRLRQGFYDRNQCTLVFGTARFIDTHTISVMQSDGTEEHYSADKFVIATGSRPYQPDNVDFMHERVYDSDSILSLKHDPQHIIIYGAGVIGCEYASIF 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_VIBF1 (Soluble pyridine nucleotide transhydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=sthA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 48/176 (27.27%), Postives = 81/176 (46.02%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   +  L    IE+  ++GG C + G IPSKAL H+     E  +S   +    +S+      ++      +   TR  +G + +N+ + + G   F+  + V+V   +G          IIATGS      GI  +  R+  S   L+L   P+ +++ GAG IG E  S++
Sbjct:   26 AAMGLTKANLNVAIIEREPSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLYCKNNTSLHSTFSDILGHAKSVIDKQTRMRQGFYDRNQCSLIFGEASFVEKNTVAVTAKDGSIETYTADKFIIATGSRPYRPEGINFNHSRVYDSDSILSLKHDPRHIIIYGAGVIGSEYASIF 200          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_VIBCM (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=sthA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 50/176 (28.41%), Postives = 77/176 (43.75%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G     IEK  ++GG C + G IPSKAL H+     E  +S        SS+      +++     +   TR  +G + +N+ T + G   FI    V+V   +G          +IATGS       +     RI  S   L L   P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLTKGGKNVAIIEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCKNNSSIHATFSTILSHAKSVIDKQTRLRQGFYDRNQCTLIFGAAHFIDAHTVAVKKADGSIDTYSADKFVIATGSRPYHPKDVDFGHPRIYDSDSILNLEHDPRHIIIYGAGVIGCEYASIF 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_VIBCH (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae GN=sthA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 50/176 (28.41%), Postives = 77/176 (43.75%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G     IEK  ++GG C + G IPSKAL H+     E  +S        SS+      +++     +   TR  +G + +N+ T + G   FI    V+V   +G          +IATGS       +     RI  S   L L   P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLTKGGKNVAIIEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCKNNSSIHATFSTILSHAKSVIDKQTRLRQGFYDRNQCTLIFGAAHFIDAHTVAVKKADGSIDTYSADKFVIATGSRPYHPKDVDFGHPRIYDSDSILNLEHDPRHIIIYGAGVIGCEYASIF 195          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
TRXR3_HUMAN5.281e-1431.58Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
STHA_PHOLL5.281e-1428.89Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
TYTR_TRYCO9.008e-1430.72Trypanothione reductase OS=Trypanosoma congolense ... [more]
TYTR_CRIFA9.008e-1432.93Trypanothione reductase OS=Crithidia fasciculata G... [more]
TRXR1_CAEEL9.008e-1428.96Thioredoxin reductase 1 OS=Caenorhabditis elegans ... [more]
GSHRC_ORYSJ9.008e-1426.82Glutathione reductase, cytosolic OS=Oryza sativa s... [more]
STHA_VIBSL1.177e-1328.41Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBF11.177e-1327.27Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBCM1.537e-1328.41Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBCH1.537e-1328.41Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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