FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ESCF3 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOUT (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOSM (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOSE (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain SE11) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOLU (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOLI (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12) GN=sthA PE=1 SV=5)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOL6 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O6 GN=sthA PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOL5 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECOK1 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O1:K1 / APEC GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
[Close]
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_ECODH (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1 
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +  ++ H     S   D+   +   D  ++  TR  +G +++N    ++G   F+    +++D  +G    +  +  +IA GS       +     RI  S   L+++  P+ +++ GAG IG E  S++
Sbjct:   21 AAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI---LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIF 195
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
STHA_ESCF34.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOUT4.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOSM4.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOSE4.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLU4.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOLI4.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOL64.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOL54.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOK14.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECODH4.943e-1225.28Soluble pyridine nucleotide transhydrogenase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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