FC931441

Overview
NameFC931441
Unique NameFC931441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:43..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHR_CANGA (Glutathione reductase OS=Candida glabrata GN=GLR1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 60/181 (33.15%), Postives = 88/181 (48.62%), Query Frame = 1
Query:  220 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA---SHGVKFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV---KSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 738
            +AA  G KT  IE + ALGGTC+NVGC+P K + ++S +     H+     +  V  S  S+  + P    ++D  +  L    E   KK  V  V G+ +F     V V   +    V     I++ATG      + +PG  +       S G   L E PKK+VV+GAGYIG+E+  V+
Sbjct:   34 RAASYGAKTLLIEGK-ALGGTCVNVGCVPKKVMWYASDLATRLTHAHEYGLAQNVPLSKESITFNWPEFKKKRDAYIHRLNGIYENNLKKEGVEVVFGWAKFNKDGNVEVTKHDNTTEVYSADRILVATGGKPVYPEKVPGFELG----TDSDGFFRLEEQPKKVVVVGAGYIGIELAGVF 209          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TRXR1_RAT (Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17
Identity = 53/160 (33.12%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  247 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 723
            T +   G LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + +L  G     ++ KV Y   YG+FI P ++     +G   V   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE
Sbjct:   47 TPLGTNGGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALE 204          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TRXR1_BOVIN (Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  247 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 723
            T +  R  LGGTC+NVGCIP K L+H + +  +A+    ++G     +V+ D   M       + +L  G     ++ KVTY   YGEF+ P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE
Sbjct:   47 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALE 204          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEF5 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=sthA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 61/181 (33.70%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL+V GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFSHPRIYDSDTILSLGHTPRKLIVYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: GSHR_ECOLI (Glutathione reductase OS=Escherichia coli (strain K12) GN=gor PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 53/175 (30.29%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  220 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 735
            +AA  G K   IE +  LGGTC+NVGC+P K + H++ +  EA+H +   +G   +  + +   ++A +   +  +    E +  KN V  +KG+  F     V   T+E     +   +I+IATG       +PG+       + S G  AL  +P+++ V+GAGYI +E+  V
Sbjct:   22 RAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQI-REAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-----VDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYG----IDSDGFFALPALPERVAVVGAGYIAVELAGV 185          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEPW (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain W619) GN=sthA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 60/181 (33.15%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: TRXR1_MOUSE (Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  247 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 723
            T +  R  LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + +L  G     ++ KV Y   YG FI P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE
Sbjct:  161 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALE 318          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEPG (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain GB-1) GN=sthA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 60/181 (33.15%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P+KL+V GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEPF (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=sthA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 60/181 (33.15%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     + V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL+V GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIVYGAGVIGCEYASIFS 195          
BLAST of FC931441 vs. ExPASy Swiss-Prot
Match: STHA_PSEFS (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=sthA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 60/181 (33.15%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  211 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 741
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P+KL++ GAG IG E  S+++
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFS 195          
The following BLAST results are available for this feature:
BLAST of FC931441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
GSHR_CANGA1.754e-1733.15Glutathione reductase OS=Candida glabrata GN=GLR1 ... [more]
TRXR1_RAT2.992e-1733.13Thioredoxin reductase 1, cytoplasmic OS=Rattus nor... [more]
TRXR1_BOVIN5.103e-1732.50Thioredoxin reductase 1, cytoplasmic OS=Bos taurus... [more]
STHA_PSEF51.485e-1633.70Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHR_ECOLI1.485e-1630.29Glutathione reductase OS=Escherichia coli (strain ... [more]
STHA_PSEPW1.939e-1633.15Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
TRXR1_MOUSE2.533e-1632.50Thioredoxin reductase 1, cytoplasmic OS=Mus muscul... [more]
STHA_PSEPG2.533e-1633.15Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEPF2.533e-1633.15Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEFS2.533e-1633.15Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionC34105B06EF PostHarvP1 Citrus clementina cDNA clone C34105B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931441 ID=FC931441; Name=FC931441; organism=Citrus clementina; type=EST; length=741bp
GAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGGTGATGGC
AAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTCTCGAACT
CGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAGGGGCTTC
GCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTGGACCTGG
TGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAGACCACGT
GCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGTCGGATGC
ATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATGAAGCCAT
GCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAAGTTGATT
TGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCTTACAAGA
GGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGAAAGGATA
TGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATTGAAGGTG
GAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGGTTCTGAC
GTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTGTGTCATC
CACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCATTG
GGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCC
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