FC931462

Overview
NameFC931462
Unique NameFC931462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.654e-51
Identity = 96/141 (68.09%), Postives = 110/141 (78.01%), Query Frame = 1
Query:  247 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            KDY +PPPAPL +  EL  WSFYRA IAEF+AT LFLY+TV TV+G       C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCLGAICG  +VK F  + Y+ LGGGA+ ++
Sbjct:   13 KDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVA 153          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.160e-51
Identity = 103/164 (62.80%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  202 RESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            ++ +  G  A     KDYT+PPPAPL +  EL+ WS YRA IAEF+AT LFLYITV TV+G         S   + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+I QCLGAICG  +VKGFQ + Y   GGGA+ LS
Sbjct:    3 KDIEASGPEAGEFSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELS 166          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.160e-51
Identity = 103/158 (65.19%), Postives = 115/158 (72.78%), Query Frame = 1
Query:  220 GTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            G  A     KDYT+PPPAPL +  EL+ WS YRA IAEF+AT LFLYITV TV+G         S   + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+I QCLGAICG  +VKGFQ + Y   GGGA+ LS
Sbjct:   10 GPEAGEFSAKDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELS 167          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.822e-51
Identity = 99/143 (69.23%), Postives = 112/143 (78.32%), Query Frame = 1
Query:  247 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--VSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            KDYT+PPPAPLF+ GEL  WSFYRA IAEF+AT LFLYITV TV+G  V  S  +C  VG  GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+S+ RAV Y++ QCLG I G  +VKG  K QY   GGGA+M++
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVA 157          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.822e-51
Identity = 98/154 (63.64%), Postives = 116/154 (75.32%), Query Frame = 1
Query:  247 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLSKATAR 684
            KDYT+PPPAPL +  EL SWS YRA IAEF+AT LFLYITV TV+G         S + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAICG  +VK FQ + ++  GGGA+ L+   +R
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSR 172          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.685e-51
Identity = 100/158 (63.29%), Postives = 116/158 (73.42%), Query Frame = 1
Query:  220 GTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            G AA     KDYT+PPPAPL +  EL SWS YRA IAEF+AT LFLYITV TV+G         S + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAICG  +VK FQ + +   GGGA+ L+
Sbjct:   10 GGAAGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLA 167          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 104/177 (58.76%), Postives = 120/177 (67.80%), Query Frame = 1
Query:  163 GKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            GKE DV  G                  V+DY +PPPAPL +  EL  WS YRA IAEFVAT LFLY+TV TV+G         S   + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGA+CG A+VKGFQ S Y+  GGGA+ L+
Sbjct:    2 GKEADVEAGG-----------------VRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELA 161          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.210e-51
Identity = 101/147 (68.71%), Postives = 113/147 (76.87%), Query Frame = 1
Query:  247 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVS-KSKSK-----CPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            +DY +PPP P F+  EL+ WS YRA IAEFVAT LFLYITVLTV+G   +S +K     C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCLGAICG   VK FQ S Y+  GGGA+ L+
Sbjct:   14 RDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLA 160          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 1
Query:  226 AAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            AA   + KDY++PPPAPL +  EL+ WS YRA IAEFVAT LFLYITV TV+G         S   + C  VG+ GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAICG  +VKGFQ + Y   GGGA+ LS
Sbjct:    7 AAAAHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELS 162          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 96/156 (61.54%), Postives = 115/156 (73.72%), Query Frame = 1
Query:  247 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK----------SKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLSKATAR 684
            KDYT+PPPAPL +  EL SWS YRA IAEF+AT LFLY+TV TV+G             + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YM+ QCLGA+CG  +VK FQ + ++  GGGA+ L+   +R
Sbjct:   19 KDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSR 174          
The following BLAST results are available for this feature:
BLAST of FC931462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
PIP28_ARATH1.654e-5168.09Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP24_MAIZE2.160e-5162.80Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE2.160e-5165.19Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP26_ORYSJ2.822e-5169.23Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE2.822e-5163.64Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP21_ORYSJ3.685e-5163.29Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP25_ORYSJ4.813e-5158.76Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP22_ARATH8.210e-5168.71Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP25_MAIZE1.072e-5064.10Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP22_MAIZE1.072e-5061.54Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105D04EF PostHarvP1 Citrus clementina cDNA clone C34105D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931462 ID=FC931462; Name=FC931462; organism=Citrus clementina; type=EST; length=694bp
GACCAAAAGCTTCACTACCCTTTGTCCCAAACTCACGTTACAAATACCCC
CCGGCTCCCTCACTCTTAAATCGTGAGCCCGTTGTGCCATTTATTGATTC
AATTCACTCCCAAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAG
AACATAATGGAGGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTA
TCGAGAGAGTCAACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGG
ATTACACGGAGCCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCG
TCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTT
GTTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAA
GCAAATGTCCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGC
ATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACAT
TAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTA
CCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGT
GCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGG
CGGTGCCCACATGCTCAGCAAGGCTACAGCAAGGGAGATGGCCT
back to top