FC931462

Overview
NameFC931462
Unique NameFC931462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:96..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            +F++A  AEF+AT +F+ + V + +    S++  P V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+I QCLGAI GA ++
Sbjct:   33 AFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL 133          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYE 639
            E+    F+RA +AEF+A  LF++I++ + +G +    +  T+    +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+GAI  +A++ G   S  E
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLE 121          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  310 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQG----IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKS 630
            F+RA +AEF+A  LF++I++ + +G +       T G       ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+GAI   A++ G   S
Sbjct:   10 FWRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSS 120          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  310 FYRAGIAEFVATFLFLYITVLTVMGVSKS-KSKCPTVGIQG---IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKS 630
            F+RA +AEF+A  LF++I++ + +G     KS   T  +Q    ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+GAI   A++ G   S
Sbjct:   10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS 120          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG 618
            E+ S +F +A  AEF+AT +F++  + + +   K  S  PT  I  IA AFG  I  L      +SGGHINPA+T  L +  ++SL RAVFY++ Q +GAI GA ++ G
Sbjct:    4 EVCSLAFLKAVFAEFLATLIFVFFGLASAL---KWPSALPT--ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYG 107          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKS 630
            E+    F+RA +AEF+A  LF++I++ + +G +    +  T+    +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+GAI   A++ G   S
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSS 118          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            +F++A  AEF+A  +F+ ++V + +    S++  P V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 133          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            +F++A  AEF+A  +F+ ++V + +    S++  P V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 136          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  310 FYRAGIAEFVATFLFLYITVLTVMGVSKS-KSKCPTVGIQG---IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKS 630
            F+RA +AEF+A  LF++I++ + +G     KS   T  +Q    ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+GAI    ++ G   S
Sbjct:   10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSS 120          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  310 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQG----IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKS 630
            F+RA +AEF+A  LF++I++ + +G         T G       ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+GAI   A++ G   S
Sbjct:   10 FWRAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSS 120          
The following BLAST results are available for this feature:
BLAST of FC931462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
AQP4_MOUSE1.910e-1543.14Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP1_RAT4.256e-1538.14Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_CANFA5.558e-1539.64Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN5.558e-1540.54Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP5_PIG9.481e-1542.20Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP1_MOUSE9.481e-1538.26Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP4_RAT1.238e-1441.18Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL1.238e-1441.18Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP1_SHEEP1.238e-1439.64Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_PIG2.112e-1439.64Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC34105D04EF PostHarvP1 Citrus clementina cDNA clone C34105D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931462 ID=FC931462; Name=FC931462; organism=Citrus clementina; type=EST; length=694bp
GACCAAAAGCTTCACTACCCTTTGTCCCAAACTCACGTTACAAATACCCC
CCGGCTCCCTCACTCTTAAATCGTGAGCCCGTTGTGCCATTTATTGATTC
AATTCACTCCCAAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAG
AACATAATGGAGGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTA
TCGAGAGAGTCAACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGG
ATTACACGGAGCCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCG
TCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTT
GTTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAA
GCAAATGTCCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGC
ATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACAT
TAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTA
CCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGT
GCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGG
CGGTGCCCACATGCTCAGCAAGGCTACAGCAAGGGAGATGGCCT
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