FC931462

Overview
NameFC931462
Unique NameFC931462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  310 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKS 630
            F+RA +AEF+AT LF++I++ + +G         T     +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+GAI   A++ G   S
Sbjct:   10 FWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS 118          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTV-GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG 618
            EL S SF+RA +AEF+ + L+      T++G+  S    P   G+ G A AFG     LV     +SGGHINPA+T    LA +LSL RA+ Y++ Q LGA+ GA V+ G
Sbjct:    3 ELRSSSFWRAILAEFLGSLLY------TLLGLGASLRWAPGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYG 106          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            +F++A  AEF+A  +F+ +++ + +    ++   P V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            +F++A  AEF+A  +F+ +++ + +     ++  P V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG 618
            E  S+SF+RA  AEF  T  +++      +G S   +  P   +  IA AFG ++  +V     +SG HINPAVTF   +  ++SL RA+FY+  Q LGA+ GAAV+ G
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFG----LGASLKWAAGPA-NVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYG 106          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCPTVG----IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG 618
            E    +F+RA IAEF+A  LF++I++   +G +    +    TVG    I  ++ AFG  I  +      +SG H+NPAVT G  L+ ++S+ +AV Y+I QCLGA+   A++ G
Sbjct:    4 EFKKKAFWRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSG 118          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            E+ S +F++A  AEF+AT +F++  + + +   K  S  PT  I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RAVFY+  Q +GAI GA ++
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL 105          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  310 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKS 630
            F+RA +AEF+A  LF++I++ + +G         T     +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+GAI   A++ G   S
Sbjct:   10 FWRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS 118          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG 618
            E+ S +F +A  AEF+AT +F++  + + +   K  S  P+V    I+ AFG  I  +      +SGGH+NPA+T  L +  ++SL RAVFY++ Q +GAI GAA++ G
Sbjct:    4 EVCSAAFLKAVFAEFLATLIFVFFGLGSAL---KWPSAMPSV--LQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYG 107          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            +F++A  AEF+A  +F+ +++ + +    ++   P V +  I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++VFY+  QCLGAI GA ++
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL 133          
The following BLAST results are available for this feature:
BLAST of FC931462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
AQP1_HUMAN2.758e-1439.45Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
MIP_CHICK3.603e-1443.64Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP4_HUMAN8.026e-1439.22Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME8.026e-1439.22Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
MIP_RANPI1.048e-1340.37Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQPA_RANES1.048e-1337.39Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP5_RAT1.369e-1341.12Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP1_PONAB1.369e-1338.53Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP5_SHEEP1.788e-1339.45Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP4_BOVIN1.788e-1338.24Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC34105D04EF PostHarvP1 Citrus clementina cDNA clone C34105D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931462 ID=FC931462; Name=FC931462; organism=Citrus clementina; type=EST; length=694bp
GACCAAAAGCTTCACTACCCTTTGTCCCAAACTCACGTTACAAATACCCC
CCGGCTCCCTCACTCTTAAATCGTGAGCCCGTTGTGCCATTTATTGATTC
AATTCACTCCCAAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAG
AACATAATGGAGGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTA
TCGAGAGAGTCAACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGG
ATTACACGGAGCCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCG
TCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTT
GTTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAA
GCAAATGTCCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGC
ATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACAT
TAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTA
CCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGT
GCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGG
CGGTGCCCACATGCTCAGCAAGGCTACAGCAAGGGAGATGGCCT
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