FC931462

Overview
NameFC931462
Unique NameFC931462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  316 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCPT--VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 615
            +A +AEF++T +F++  V + +  +K     P    G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   VFY I Q LGAI GA +V+
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQ 121          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            EL S SF+RA  AEF AT  +++      +G S   +  P   +Q +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ Y++ Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL 104          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            EL S SF+RA  AEF AT  +++      +G S   +  P   +Q +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL 104          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            E+ S +F++A  AEF+AT +F++  + + +   K  S  PT  I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RA+FY+  Q +GAI GA ++
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL 105          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            EL S SF+RA  AEF A+  +++      +G S   +  P   +Q +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM+ Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL 104          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG 618
            E+ S +F +A  AEF+AT +F++  + + +   K  S  PT  I  IA AFG  I  L      +SGGHINPA+T  L +  ++SL RA FY+  Q +GAI GA ++ G
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYG 107          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQY 636
            + +R   AE + T L + I   +  GV  S+       +  IA  FG +I  +V C   +SG HINPAVT GL +   +S+ +A+FY+I+QC+GAI G+A++K    +++
Sbjct:   24 TIWRCLAAELIGTLLLVLIGTGSCTGVQISEGDV----VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEF 129          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            EL S SF+RA  AEF AT  +++      +G S   +  P   +Q +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTPGPLHVLQ-VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCP-TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            EL S SF+RA  AEF AT  +++       G+  S    P  + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFF------GLGSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  307 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG 651
            + +R  +AEF+ TF  + I + + MG     +   T     IA+ FG ++  L      +SG HINPAVT GL +   +S+ +  FY++ QC+GAI GAA++K    S  +++GG
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGWGGDYAPTMTQ----IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPS--DVIGG 129          
The following BLAST results are available for this feature:
BLAST of FC931462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
TIP22_ORYSJ2.335e-1340.20Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
MIP_SHEEP2.335e-1342.06Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RABIT2.335e-1342.99Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP5_MOUSE2.335e-1340.19Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
MIP_BOVIN3.050e-1342.06Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP5_HUMAN3.050e-1341.28Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP_CICVR3.983e-1336.36Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
MIP_CANFA6.794e-1342.99Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_HUMAN8.874e-1341.67Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQP_AEDAE8.874e-1335.65Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]

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Properties
Property NameValue
Genbank descriptionC34105D04EF PostHarvP1 Citrus clementina cDNA clone C34105D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931462 ID=FC931462; Name=FC931462; organism=Citrus clementina; type=EST; length=694bp
GACCAAAAGCTTCACTACCCTTTGTCCCAAACTCACGTTACAAATACCCC
CCGGCTCCCTCACTCTTAAATCGTGAGCCCGTTGTGCCATTTATTGATTC
AATTCACTCCCAAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAG
AACATAATGGAGGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTA
TCGAGAGAGTCAACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGG
ATTACACGGAGCCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCG
TCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTT
GTTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAA
GCAAATGTCCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGC
ATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACAT
TAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTA
CCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGT
GCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGG
CGGTGCCCACATGCTCAGCAAGGCTACAGCAAGGGAGATGGCCT
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