FC931462

Overview
NameFC931462
Unique NameFC931462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  316 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 615
            RA I+EF+AT +F++    +V+ + K      T G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL RAV Y + Q LGA+    +++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLR 126          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            EL S +F RA +AEF+AT LF++      +G +   +  P   +Q IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFG----LGSALQWASSPPSVLQ-IAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL 104          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  289 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 594
            G+  S S  +A ++EF+AT LF++  V + +  +K  S       G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L    FY I QCLG+I
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSI 113          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  286 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            P E +     +AG+AEF++TF+F++    + +  +K  +       G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R + Y+I Q LG+I  +A++
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALL 121          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  292 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 612
            EL S +F RA +AEF+AT LF++      +G +   +  P   +Q IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFG----LGSALQWASSPPSVLQ-IAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL 104          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  289 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 615
            G+  S +  +A +AEF+AT LF++  V + +  +K  S +     G+  +A A    +F  V   A +SGGH+NPAVT GL +   +++   +FY I QCLG+     ++K
Sbjct:   10 GDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK 120          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  313 YRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 615
            +R  +AE + TF  + I V +  G S+     P      IA+ FG  +  L      ISG HINPAVT G  +  ++S+ ++V Y+ +QC+GAI GAAV+K
Sbjct:   23 WRQLMAELIGTFFLVVIGVGSCTGGSEWSPSIPQ-----IAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIK 118          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 46/127 (36.22%), Postives = 60/127 (47.24%), Query Frame = 1
Query:  316 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQG------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLSKAT 678
            R   AEF+ T       VL + GV  +     T G  G       AW FG M+   VY   GISGGHINPAVT  + + RK    +   Y++ Q +GA  G A+  G+  S      GG H+ + AT
Sbjct:  348 REPFAEFLGTL------VLVIFGVGGNLQATVTKGSGGSYESLSFAWGFGCMLG--VYVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTTAT 466          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  316 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 615
            RA I+EF+AT +F++    +++ + K      T G +  ++ A    +   V     ISGGH+NPA+TFG  L  +LSL RA+FY + Q LGA+    +++
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLR 127          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 39/112 (34.82%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  286 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 615
            PGE S     RA  AEF +  +F++    + M   K     P    G+   + +    +F  V   A +SGGH+NPAVTFG F+   ++L RA+ Y I Q LGA+    ++K
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK 122          
The following BLAST results are available for this feature:
BLAST of FC931462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
TIP31_MAIZE9.811e-1236.63Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQP2_MOUSE9.811e-1242.06Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP23_ARATH1.281e-1139.42Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP1_MEDTR1.281e-1134.23Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP2_RAT1.281e-1142.06Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP_ANTMA1.674e-1134.23Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
AQP_HAEIX1.674e-1138.61Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
YFF4_YEAST2.186e-1136.22Uncharacterized membrane protein YFL054C OS=Saccha... [more]
TIP31_ORYSJ2.186e-1135.64Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH2.186e-1134.82Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105D04EF PostHarvP1 Citrus clementina cDNA clone C34105D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931462 ID=FC931462; Name=FC931462; organism=Citrus clementina; type=EST; length=694bp
GACCAAAAGCTTCACTACCCTTTGTCCCAAACTCACGTTACAAATACCCC
CCGGCTCCCTCACTCTTAAATCGTGAGCCCGTTGTGCCATTTATTGATTC
AATTCACTCCCAAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAG
AACATAATGGAGGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTA
TCGAGAGAGTCAACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGG
ATTACACGGAGCCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCG
TCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTT
GTTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAA
GCAAATGTCCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGC
ATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACAT
TAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTA
CCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGT
GCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGG
CGGTGCCCACATGCTCAGCAAGGCTACAGCAAGGGAGATGGCCT
back to top