FC931468

Overview
NameFC931468
Unique NameFC931468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:45..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: RPN8_CANGA (26S proteasome regulatory subunit RPN8 OS=Candida glabrata GN=RPN8 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.402e-55
Identity = 105/208 (50.48%), Postives = 149/208 (71.63%), Query Frame = 2
Query:   95 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTAXKGLDARLREIRGYLD 715
            + V + PLVLLS++D+Y R      KR VGV+LG S   T+ V+NS+A+PFEED+K+  +WFLDHNY ESM  M K+INAKE ++GWY +GPKLR +DL I++LF  Y   NP+L+I+DV+ +++G+PT AY  VE+VK++ T  ++K F+H+P  + A E EEIGVEHLLRDV+D     L+  +T +L + KGL  +L +I  YL+
Sbjct:    6 DNVTIAPLVLLSVLDHYERTNTPEGKRCVGVILGDSQTNTIRVTNSFALPFEEDEKNSDVWFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQGNPLLLIVDVKQQDVGLPTDAYMAVEQVKDDGT-STEKTFLHLPCTVEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQKKLNDIVIYLN 212          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 63/207 (30.43%), Postives = 105/207 (50.72%), Query Frame = 2
Query:  107 VHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFK-GTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVH---VPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTAXKGLDARLREIRGYLD 715
            +HPLV+ ++ D + R   D+ +RV+G LLGS    GTVD+ NSYAVP  E      +   D +YH +M +   ++N+KE +VGWYSTG  +      IH  +   VPNP+ + +D          KA+     V  N +   +++  H   +P ++   + E +G + L    K T++  L N++ G     + L   + ++  Y+D
Sbjct:   30 IHPLVIFNVCDCFVR-RPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAF-----VSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVL----KATSVDKLPNDLEGMELTMERLLTLINDVYKYVD 223          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 607
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 607
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 607
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   92 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 254          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EI3F1_DROMO (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 55/171 (32.16%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 613
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++NA E+VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANENVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQSGRMGLRAYICIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 607
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EI3F1_DROWI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila willistoni GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 613
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG ++  +   IH+ +     NPV V +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYELNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHVTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EI3F1_DROVI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 55/171 (32.16%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 613
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++NA E VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 613
            V VHP+VL  +VD Y R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N  E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAYERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
The following BLAST results are available for this feature:
BLAST of FC931468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPN8_CANGA4.402e-5550.4826S proteasome regulatory subunit RPN8 OS=Candida ... [more]
EIF3F_ARATH3.520e-2030.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR1.932e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA1.932e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN1.932e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROMO4.304e-1832.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE5.621e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROWI5.621e-1832.75Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROVI1.252e-1732.16Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN1.252e-1732.75Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34105D11EF PostHarvP1 Citrus clementina cDNA clone C34105D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931468 ID=FC931468; Name=FC931468; organism=Citrus clementina; type=EST; length=717bp
AAGTACAGACTACAGAGAGCATCAGTGACAACAAACACAGAGAGATTCGA
ATATGGACGTGATAAAGACGCAGCAAATTTCATCGAGACCCATAGAGAAG
GTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATTACAACCG
CGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCT
CCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCCTTTTGAG
GAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACTACCATGA
ATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAG
GTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGACATTCAC
CAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTATTGATGT
CCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGATGTTGAGG
AGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTACACGTG
CCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGGAGCACTT
GCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAATGAGGTCA
CTGGAAAACTTACAGCCCNTAAGGGTCTGGATGCTCGTTTGCGTGAGATC
CGTGGTTACCTTGACCT
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