FC931468

Overview
NameFC931468
Unique NameFC931468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:45..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 613
            V VHP+VL  +VD + R   ++  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  ++Y  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 67/220 (30.45%), Postives = 111/220 (50.45%), Query Frame = 2
Query:   83 SRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLF------HNYVPNPVLVIID-VQPKELGIPTKAYYDVEEVKENATQKSQK-VFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANE-VTGKLTAXKGLDARLREIRGYLD 715
            SR +  V VHP+ L SI+D+Y R   D + RV+G LLG+  +  +++ N +AVP  ED ++  +  +D  YH SMY + +++   E +VGWY+T P+L      I   +      H  V   +   ID  +P  LGI  K+Y         AT K++  VF+ +P+ +  H   E            +++S LA++ ++  LT    L   L++++  LD
Sbjct:   26 SRSVTGVHVHPVALFSILDHYLR-RNDGQHRVIGTLLGTRTESEIEIKNCFAVPHLEDAEEGQVQ-VDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGI--KSYI---SSPLGATPKAENCVFLPLPTNL-LHSTPE-----------HSSLSLLASQNISSPLTDLDALAVSLKQVQSQLD 226          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV----KDTTISTLANEVTGKLTAXKGLDARLREIRGYLD 715
            V VHP+VL  IVD Y R   D+  RV+G L G+S KG V+V+N + VP +E          + NY   +Y + +R+N+ E +VGW++TG ++  +   IH+ +      PV V +D       +  +AY  V     N  Q    +F  V   +  +E E +G++   + V    + ++     +++   ++A   L++ L +   Y D
Sbjct:    7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLWGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQVCQKTVSGGGRGSSGVAAGSDLAQVMSAASSLESLLEQALQYAD 209          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6B_ARATH (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 62/223 (27.80%), Postives = 105/223 (47.09%), Query Frame = 2
Query:  107 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTIST-LANEVTGKLTAXKGLDARLR 694
            +HPLV+L+I D++ RV                            RV G ++G     TV++ NS+ + F     DP +  LD ++ E    ++K++    +V+GWYSTG    E+D+ IH+   +   +PV V+++  +   +  +P   Y     V +      Q +FVH    I   E E I V+H+  L+     + +T LA  +TG  +A K L++R+R
Sbjct:   13 LHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRGRTVEIFNSFELIF-----DPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGI---PQSIFVHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIR 227          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 55/211 (26.07%), Postives = 101/211 (47.87%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNR--VAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTAXKGLDARLREIRGYLD 715
            V VHP+V+ +I+D+Y R  V +D   RV+G LLG +  G +++ N + V   E ++      ++  Y   M  +  + + +E ++GWY+TG  + EN + I+  + + + N  P+ + +D  +    +GI     Y    +  N        F  +P EI   E E  G+E + +   D   ++L +E+     +   LD  L  I  Y++
Sbjct:   15 VKVHPVVIFNILDHYIRRNVGQD---RVIGTLLGFNNDGVLEIRNCFPVVHSETEQIA----VEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHA---YMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELESLQGSLTKLDEMLESITSYIE 215          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6A_ARATH (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 59/223 (26.46%), Postives = 103/223 (46.19%), Query Frame = 2
Query:  107 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTIST-LANEVTGKLTAXKGLDARLR 694
            +HPLV+++I D+Y RV                            RV G ++G     TV++ NS+ + +     DP    LD ++ E    ++K++    +++GWYSTG    E+D+ IH+   +   +PV V+++  +   +  +P   Y     V +      Q +F H    I   E E I V+H+  L+     + +T LA  +TG  +A K L++R+R
Sbjct:   13 LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVEIFNSFELLY-----DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGI---PQLIFAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIR 227          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_XENLA (COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 52/208 (25.00%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTAXKGLDARLREIRGYL 712
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +  + +D+   I   +  Y+ +    FK++      +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   Y   E V +    ++  +   +   +A  E E IGV+H+ R     +   ST+A  +  + +A K L +R+R I  Y+
Sbjct:   32 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSQINDEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYV 233          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 62/232 (26.72%), Postives = 110/232 (47.41%), Query Frame = 2
Query:   35 TQRDSNMDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRK----RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDV-QPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR-DVKDTTISTLANEVTGKLTAXKGLDARLREIRGYL 712
            T  D+N  V++    SS    +V +HPLVL++I D++ R    +      RV+GV+LG      V++ NS+ + +   DK      LD  Y    Y   +++     ++GWYSTG ++ ++D+ +H+    +  +P+ +++D   PK   +P   Y   E        +   +FV  P +I   E E IGV H+ +     +  S L + +     A   L+ R++ +  YL
Sbjct:    8 TTTDANKLVLEKSANSSGL--EVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVEICNSFEMVYATVDKQ---LVLDIEYLRKKY---EQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIY---ESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVTPSGSEGSGLTSHLFTMHNAISMLNIRVKALSDYL 228          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 51/208 (24.52%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTAXKGLDARLREIRGYL 712
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +  + +++   I   +  Y+ +    FK++      +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   Y   E V +    ++  +   +   +A  E E IGV+H+ R     +   ST+A  +  + +A K L +R+R I  Y+
Sbjct:   33 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSQINEEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYV 234          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/208 (24.04%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTAXKGLDARLREIRGYL 712
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A K L +R++ I  Y+
Sbjct:   42 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 243          
The following BLAST results are available for this feature:
BLAST of FC931468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
EI3F1_DROPE4.028e-1630.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_USTMA6.871e-1630.45Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_BOMMO1.531e-1528.23Eukaryotic translation initiation factor 3 subunit... [more]
CSN6B_ARATH7.596e-1527.80COP9 signalosome complex subunit 6b OS=Arabidopsis... [more]
EIF3F_DICDI2.210e-1426.07Eukaryotic translation initiation factor 3 subunit... [more]
CSN6A_ARATH8.399e-1426.46COP9 signalosome complex subunit 6a OS=Arabidopsis... [more]
CSN6_XENLA1.097e-1325.00COP9 signalosome complex subunit 6 OS=Xenopus laev... [more]
CSN6_DICDI1.871e-1326.72COP9 signalosome complex subunit 6 OS=Dictyosteliu... [more]
CSN6_XENTR3.192e-1324.52COP9 signalosome complex subunit 6 OS=Xenopus trop... [more]
CSN6_PONAB3.192e-1324.04COP9 signalosome complex subunit 6 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionC34105D11EF PostHarvP1 Citrus clementina cDNA clone C34105D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931468 ID=FC931468; Name=FC931468; organism=Citrus clementina; type=EST; length=717bp
AAGTACAGACTACAGAGAGCATCAGTGACAACAAACACAGAGAGATTCGA
ATATGGACGTGATAAAGACGCAGCAAATTTCATCGAGACCCATAGAGAAG
GTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATTACAACCG
CGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCT
CCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCCTTTTGAG
GAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACTACCATGA
ATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAG
GTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGACATTCAC
CAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTATTGATGT
CCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGATGTTGAGG
AGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTACACGTG
CCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGGAGCACTT
GCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAATGAGGTCA
CTGGAAAACTTACAGCCCNTAAGGGTCTGGATGCTCGTTTGCGTGAGATC
CGTGGTTACCTTGACCT
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