FC931475

Overview
NameFC931475
Unique NameFC931475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: ADT1_MAIZE (ADP,ATP carrier protein 1, mitochondrial OS=Zea mays GN=ANT1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 54/204 (26.47%), Postives = 83/204 (40.69%), Query Frame = 3
Query:   33 KRMVIDXXXXXXXXXXXRTVTSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQ------GEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFK 626
            K  +ID           +T  +P++ +K+  Q Q E   S     G +S P  Y G+    K   ++EG    WRGN   ++   P  A+ F      K         + +    A  +  SG  AG ++    Y  D  RT LA+       G  + +  +   +   + + G  GLY G + + V II Y GL FG YD+ K
Sbjct:   85 KNFMIDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKS-----GRLSEP--YKGIVDCFKRTIKDEGFSSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAG-NLASGGAAGASSLFFVYSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGLYDSIK 280          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: ADT2_MAIZE (ADP,ATP carrier protein 2, mitochondrial OS=Zea mays GN=ANT2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 54/204 (26.47%), Postives = 83/204 (40.69%), Query Frame = 3
Query:   33 KRMVIDXXXXXXXXXXXRTVTSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQ------GEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFK 626
            K  +ID           +T  +P++ +K+  Q Q E   S     G +S P  Y G+    K   ++EG    WRGN   ++   P  A+ F      K         + +    A  +  SG  AG ++    Y  D  RT LA+       G  + +  +   +   + + G  GLY G + + V II Y GL FG YD+ K
Sbjct:   85 KNFMIDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKS-----GRLSEP--YKGIADCFKRTIKDEGFSSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAG-NLASGGAAGASSLFFVYSLDYARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGLYDSIK 280          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: MCFY_DICDI (Mitochondrial substrate carrier family protein Y OS=Dictyostelium discoideum GN=mcfY PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 53/189 (28.04%), Postives = 83/189 (43.92%), Query Frame = 3
Query:   99 PLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMR-----------SAFVDIV-STRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKR 629
            PLD+IK R Q+     +     N         T + +  KD+ + EG+ G ++G    L++    +AIQF +      +       +NH  LS   S   G++AG A +  + P DL++  +  QG P   P              S F  ++   +G  G Y GLSPTL   +P   + F TY+T K+
Sbjct:  157 PLDLIKTRIQLSQSGVSGGGGTN---------TSIIKIFKDVIKTEGVIGLFKGLSSPLILSALVTAIQFGLFEDTLKYFRKHQYFKNHDTLSLLFS---GSIAGFAQSFITCPVDLVKIQMQIQGIPSSQPNSNNNNNNNKAKGNSYFTKLIYREKGLLGFYQGLSPTLFRDVPGLAIFFTTYETLKK 333          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: MCFM_DICDI (Mitochondrial substrate carrier family protein M OS=Dictyostelium discoideum GN=mcfM PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 46/187 (24.60%), Postives = 89/187 (47.59%), Query Frame = 3
Query:   90 VTSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKT-FAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILA------SQGEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKR 629
            +T+P+ +IK R Q+Q   + ++            YTG+F   K   + EG  G ++G +P+L +   +  IQ +    +K  F++ S K+ + +N S    +++ +++   A+   YPF +++T L       +Q   +VY   +     I+   G  G Y GL P  +++IP   +    Y+  K+
Sbjct:  127 ITNPIFLIKTRMQLQTPGSANY------------YTGIFDGIKKTVKVEGFKGLYKGVIPSLWLTF-HGGIQMSSYEHIKFYFSSNSGKSLDSLNASEI--FIASSISKFLASTILYPFQVVKTRLQDERNIPNQNNVRVYNGTKDVIFKILKNEGIIGFYRGLVPNTLKVIPNTSITLLLYEEIKK 298          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: UCP2_DANRE (Mitochondrial uncoupling protein 2 OS=Danio rerio GN=ucp2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 51/181 (28.18%), Postives = 79/181 (43.65%), Query Frame = 3
Query:   93 TSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQ---GEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFK 626
            T PLD  K+R Q+Q E   S  +  G    P KY G+F     + R EG    + G V  L   M +++++  +   +K F    +K  +H  + + L  ++G   G  A   + P D+L+    +Q   G  K Y +   A+  I    GFRGL+ G  P +         +  TYD  K
Sbjct:   31 TFPLDTAKVRLQIQGENKASTNMGRG----PVKYRGVFGTISTMVRVEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFY---TKGSDHAGIGSRL--MAGCTTGAMAVAVAQPTDVLKVRFQAQVSAGASKRYHSTMDAYRTIAKEEGFRGLWKGTGPNITRNAIVNCTELVTYDLIK 202          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: S2543_MOUSE (Solute carrier family 25 member 43 OS=Mus musculus GN=Slc25a43 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 50/188 (26.60%), Postives = 85/188 (45.21%), Query Frame = 3
Query:   90 VTSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQ--------GEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKR 629
            VT P D+IK R  VQ            ++  PS Y G+  A   I+++EG    +RG    +L  +P+SA    V   L+    G     +H+      ++ +  +A   +   S+PFD ++  + +Q        G    +      F  IV T+G  GL+ GL+  L++++PY G+ F  ++  KR
Sbjct:  123 VTYPTDLIKTRLMVQ------------NVLEPS-YRGLIHAFSTIYQQEGFLALYRGVSLTVLGAVPFSAGSLLVYMNLEKVWNGPRDRFSHLQ-----NFANVCVAAAVSQTLSFPFDTVKRKMQAQSPYLPHYGGVDVHFSGAADCFRQIVKTQGVLGLWNGLTANLLKVVPYFGVMFSMFEFCKR 292          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: ADT1_GOSHI (ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 51/187 (27.27%), Postives = 81/187 (43.32%), Query Frame = 3
Query:   84 RTVTSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILAS------QGEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFK 626
            +T  +P++ +K+  Q Q E   S     G +S P  Y G+    K   ++EG    WRGN   ++   P  A+ F      K         + +    A  +  SG  AG ++ +  Y  D  RT LA+      +G  + +  +   +   + + G  GLY G + + V II Y GL FG YD+ K
Sbjct:  101 KTAAAPIERVKLLIQNQDEMIKS-----GRLSEP--YKGIGDCFKRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAG-NLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLK 279          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: S2540_XENLA (Solute carrier family 25 member 40 OS=Xenopus laevis GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 49/198 (24.75%), Postives = 89/198 (44.95%), Query Frame = 3
Query:   87 TVTSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRT---ILASQGEPKVYPTMRSAFV-----DIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIR 656
            T+ SPL++I+ + Q                 RP  Y  +    +    ++G    W+G  P +L  +P+SA+ +   H  +       +  N +  +  +S+ +GA++G  A + + PFD+++T   +   + E   Y   RS+        IV+  GF GL+AGL P L+++ P   +   TY+  K +    N  R
Sbjct:  158 TLISPLELIRTKMQY----------------RPLSYKELMICIQSSLAKDGWLSLWKGWGPTVLRDVPFSALYW---HNYELVKQSLCQRYNTLQPTFAISFTAGAVSGSIAAIVTLPFDVVKTRRQVEVGELEVFTYSHKRSSSTWKLMSAIVAENGFGGLFAGLVPRLIKVAPACAIMISTYEFGKSFFRKLNNER 336          

HSP 2 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 53/198 (26.77%), Postives = 83/198 (41.92%), Query Frame = 3
Query:   90 VTSPLDVIKIRFQVQLEPTTSWALL--------------NGHISRPSKYTGMFQATKDIF----REEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKR 629
            + +PLDV+KIR Q Q +P                     NG+     K  G F+ T D F    R EG+   W G  P L+M +P + I FT   +L+            I      S V+GA A   +     P +L+RT +  Q  P  Y  +       ++  G+  L+ G  PT++  +P++ L +  Y+  K+
Sbjct:   33 LVTPLDVVKIRLQAQSKPFIKGKCFVYCNGLMDHLCMCTNGNGKAWYKAPGHFRGTMDAFVQIIRSEGIKSLWSGLPPTLVMAVPATVIYFTFYDQLRVILIRRMPERAEI-----ASLVAGATARLGSATLISPLELIRTKM--QYRPLSYKELMICIQSSLAKDGWLSLWKGWGPTVLRDVPFSALYWHNYELVKQ 223          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: MFRN_DROME (Mitoferrin OS=Drosophila melanogaster GN=mfrn PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 54/198 (27.27%), Postives = 89/198 (44.95%), Query Frame = 3
Query:   90 VTSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWT--MDWNRIRSSNTSST 677
            ++SP DVIK R Q+   P                YT +    +DI++ EG   F+R     L+M +PY  I FT       F       E   N   +++  +GA AG  A   + P D+++T+L +Q E  +   M  A   I    G  G + G +  ++  +P   + + TY+ FK +   +D ++ +SS T S+
Sbjct:  124 ISSPTDVIKQRMQMYNSP----------------YTSVVSCVRDIYKREGFKAFYRAYGTQLVMNLPYQTIHFTTYE----FFQNKMNLERKYNPPVHMA--AGAAAGACAAAVTTPLDVIKTLLNTQ-ETGLTRGMIEASRKIYHMAGPLGFFRGTTARVLYSMPATAICWSTYEFFKFYLCGLDADQYKSSITGSS 298          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: YQ51_CAEEL (Uncharacterized mitochondrial carrier C16C10.1 OS=Caenorhabditis elegans GN=C16C10.1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 49/202 (24.26%), Postives = 79/202 (39.11%), Query Frame = 3
Query:   96 SPLDVIKIRFQVQLEPTTSWALLNGH-------------------ISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAY------LSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFK 626
            +PLDV+KIR Q Q  P         H                     RP  + G   A   I R EG+   W G  P ++M +P +   FT    L  +           +   +       + V+G +A   A     P +++RT +  Q +   Y  +       ++T+G    Y G +PT++  IP++G+ +  YD FK
Sbjct:   55 TPLDVVKIRLQQQTRPFPKGECFYYHNGLMEHVCVSCEVRKPCEWYQRPGNFRGTADAIVKIARHEGIRSLWSGLSPTMVMALPATVFYFTTYDNLSVWLKKKMCCRRAFSPEKWTPPDWSAAAVAGIVARTIAVTVVSPIEMIRTKM--QSKRLTYHEIGHLVRSSMATKGISSFYLGWTPTMLRDIPFSGIYWAGYDLFK 254          
The following BLAST results are available for this feature:
BLAST of FC931475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
ADT1_MAIZE1.737e-1126.47ADP,ATP carrier protein 1, mitochondrial OS=Zea ma... [more]
ADT2_MAIZE2.269e-1126.47ADP,ATP carrier protein 2, mitochondrial OS=Zea ma... [more]
MCFY_DICDI2.963e-1128.04Mitochondrial substrate carrier family protein Y O... [more]
MCFM_DICDI2.963e-1124.60Mitochondrial substrate carrier family protein M O... [more]
UCP2_DANRE3.870e-1128.18Mitochondrial uncoupling protein 2 OS=Danio rerio ... [more]
S2543_MOUSE3.870e-1126.60Solute carrier family 25 member 43 OS=Mus musculus... [more]
ADT1_GOSHI3.870e-1127.27ADP,ATP carrier protein 1, mitochondrial OS=Gossyp... [more]
S2540_XENLA5.054e-1124.75Solute carrier family 25 member 40 OS=Xenopus laev... [more]
MFRN_DROME5.054e-1127.27Mitoferrin OS=Drosophila melanogaster GN=mfrn PE=1... [more]
YQ51_CAEEL6.601e-1124.26Uncharacterized mitochondrial carrier C16C10.1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105E06EF PostHarvP1 Citrus clementina cDNA clone C34105E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931475 ID=FC931475; Name=FC931475; organism=Citrus clementina; type=EST; length=713bp
GGTTGATGGAGGAGCAGGAGCCGGGGCAATGGAAACGAATGGTGATCGAT
GCGTCTGCAGGCGCGATTGCCGGTGGAATCTCACGTACTGTAACTTCGCC
TCTTGATGTTATTAAGATCCGTTTCCAGGTTCAATTGGAGCCCACGACTT
CATGGGCGTTGCTAAATGGACATATATCCAGGCCATCAAAATATACTGGC
ATGTTCCAAGCAACGAAGGATATATTTAGAGAGGAAGGTTTATGGGGTTT
CTGGCGTGGCAATGTGCCAGCCTTACTTATGGTTATGCCATACAGTGCCA
TACAATTTACAGTGTTACACAAATTGAAAACATTCGCTGCTGGTTCTTCC
AAGGCAGAAAATCATATTAATTTAAGCGCTTACTTGTCTTATGTCAGTGG
GGCATTAGCTGGGTGTGCAGCTACTGTTGGATCATATCCATTTGATCTTT
TACGAACCATATTAGCGTCACAAGGAGAACCTAAGGTGTATCCCACAATG
AGGTCTGCATTTGTTGATATTGTCAGCACCCGAGGCTTTAGAGGACTGTA
TGCTGGGCTGTCACCTACACTGGTTGAGATTATTCCTTATGCTGGCCTGC
AATTCGGCACATATGATACATTCAAGCGCTGGACCATGGACTGGAACCGG
ATAAGATCTTCTAATACAAGCTCAACTGGTGCAGACATAATCTTTCAGTT
TTCAGCTTTTGTC
back to top