FC931475

Overview
NameFC931475
Unique NameFC931475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: MCFW_DICDI (Mitochondrial substrate carrier family protein W OS=Dictyostelium discoideum GN=mcfW PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 3
Query:   93 TSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRS----AFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRW 632
            TSP+ +IK RF  Q             + R  KY G+  +   I+ EEG  G ++G  P+LL V+ +  +QF +  K K+     +K +    L      ++ +++   A+V +YP ++LR             T R      F  IV   G+RGLY G+   L+ + P   + F +Y+  K++
Sbjct:  153 TSPIWLIKTRFITQ-----------EMVGRQKKYRGIVHSMVSIYHEEGFRGLYKGLGPSLLGVL-HVGVQFPLYEKFKSILKEKNKNKE---LGIVEIMIASSVSKIIASVVAYPHEVLRARSQDSSPDSPNRTYRGNIIQMFKQIVREEGWRGLYRGMGVNLLRVTPSCVITFTSYEYIKKF 321          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: KMCP1_RAT (Kidney mitochondrial carrier protein 1 OS=Rattus norvegicus GN=Slc25a30 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 52/179 (29.05%), Postives = 78/179 (43.58%), Query Frame = 3
Query:   93 TSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKR 629
            T P+D+ K R Q+Q +        N    R  +Y GM  A   I REEGL   + G  PA+L    Y  I+      LK  A    + E     +  ++ V G L+G  ++  + P D+L+  + +Q    V   M   F+ I    G RGL+ G+S T        G++   YD  K+
Sbjct:   23 TFPIDLTKTRLQIQGQT-------NDAKFREIRYRGMLHALMRIGREEGLRALYSGIAPAMLRQASYGTIKIGTYQSLKRLAVERPEDE-----TLLINVVCGILSGVISSAIANPTDVLKIRMQAQNS-AVQGGMIGNFISIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDITKK 188          
BLAST of FC931475 vs. ExPASy Swiss-Prot
Match: KMCP1_MOUSE (Kidney mitochondrial carrier protein 1 OS=Mus musculus GN=Slc25a30 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 52/179 (29.05%), Postives = 79/179 (44.13%), Query Frame = 3
Query:   93 TSPLDVIKIRFQVQLEPTTSWALLNGHISRPSKYTGMFQATKDIFREEGLWGFWRGNVPALLMVMPYSAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIVSTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKR 629
            T P+D+ K R Q+Q +        N    R  +Y GM  A   I REEGL   + G  PA+L    Y  I+      LK  A    + E     +  ++ V G L+G  ++  + P D+L+  + +Q    V   M  +F+ I    G RGL+ G+S T        G++   YD  K+
Sbjct:   23 TFPIDLTKTRLQIQGQT-------NDANFREIRYRGMLHALMRIGREEGLKALYSGIAPAMLRQASYGTIKIGTYQSLKRLAVERPEDE-----TLLVNVVCGILSGVISSAIANPTDVLKIRMQAQNS-AVQGGMIDSFMSIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDITKK 188          
The following BLAST results are available for this feature:
BLAST of FC931475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
MCFW_DICDI6.601e-1127.17Mitochondrial substrate carrier family protein W O... [more]
KMCP1_RAT8.621e-1129.05Kidney mitochondrial carrier protein 1 OS=Rattus n... [more]
KMCP1_MOUSE8.621e-1129.05Kidney mitochondrial carrier protein 1 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC34105E06EF PostHarvP1 Citrus clementina cDNA clone C34105E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931475 ID=FC931475; Name=FC931475; organism=Citrus clementina; type=EST; length=713bp
GGTTGATGGAGGAGCAGGAGCCGGGGCAATGGAAACGAATGGTGATCGAT
GCGTCTGCAGGCGCGATTGCCGGTGGAATCTCACGTACTGTAACTTCGCC
TCTTGATGTTATTAAGATCCGTTTCCAGGTTCAATTGGAGCCCACGACTT
CATGGGCGTTGCTAAATGGACATATATCCAGGCCATCAAAATATACTGGC
ATGTTCCAAGCAACGAAGGATATATTTAGAGAGGAAGGTTTATGGGGTTT
CTGGCGTGGCAATGTGCCAGCCTTACTTATGGTTATGCCATACAGTGCCA
TACAATTTACAGTGTTACACAAATTGAAAACATTCGCTGCTGGTTCTTCC
AAGGCAGAAAATCATATTAATTTAAGCGCTTACTTGTCTTATGTCAGTGG
GGCATTAGCTGGGTGTGCAGCTACTGTTGGATCATATCCATTTGATCTTT
TACGAACCATATTAGCGTCACAAGGAGAACCTAAGGTGTATCCCACAATG
AGGTCTGCATTTGTTGATATTGTCAGCACCCGAGGCTTTAGAGGACTGTA
TGCTGGGCTGTCACCTACACTGGTTGAGATTATTCCTTATGCTGGCCTGC
AATTCGGCACATATGATACATTCAAGCGCTGGACCATGGACTGGAACCGG
ATAAGATCTTCTAATACAAGCTCAACTGGTGCAGACATAATCTTTCAGTT
TTCAGCTTTTGTC
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