FC931478

Overview
NameFC931478
Unique NameFC931478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 259.996 bits (663), Expect = 4.641e-72
Identity = 128/175 (73.14%), Postives = 141/175 (80.57%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLP+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          

HSP 2 Score: 32.7278 bits (73), Expect = 4.641e-72
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  178 KKHGRGGQSALRFA 191          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 4.641e-72
Identity = 128/175 (73.14%), Postives = 141/175 (80.57%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLP+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          

HSP 2 Score: 32.7278 bits (73), Expect = 4.641e-72
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  178 KKHGRGGQSALRFA 191          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 4.641e-72
Identity = 128/175 (73.14%), Postives = 141/175 (80.57%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLP+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          

HSP 2 Score: 32.7278 bits (73), Expect = 4.641e-72
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  178 KKHGRGGQSALRFA 191          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 4.641e-72
Identity = 128/175 (73.14%), Postives = 141/175 (80.57%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLP+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          

HSP 2 Score: 32.7278 bits (73), Expect = 4.641e-72
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  178 KKHGRGGQSALRFA 191          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 4.642e-72
Identity = 126/175 (72.00%), Postives = 143/175 (81.71%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +  E +KN                RGNGTSMISLI+PP+DQ+SR  KML +E+GTASNIKSRVNRQSVL AITS QQRLKLYNKVPPNGLV+Y G I+T +GKE+KV IDFEPF+PIN SLYLCDNKFHT+AL ELLESD KFGFIVMDGNG LFGTLSGNTR+++HKFSVDLP+
Sbjct:    5 NANEAEKNIEIWKVKKLIKRLEAARGNGTSMISLIIPPKDQISRAAKMLAEEYGTASNIKSRVNRQSVLSAITSTQQRLKLYNKVPPNGLVVYCGEILTSEGKERKVNIDFEPFKPINTSLYLCDNKFHTEALAELLESDQKFGFIVMDGNGALFGTLSGNTRDIVHKFSVDLPK 179          

HSP 2 Score: 32.7278 bits (73), Expect = 4.642e-72
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  179 KKHGRGGQSALRFA 192          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.622e-69
Identity = 120/151 (79.47%), Postives = 136/151 (90.07%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            RGNGTSMISLI+PP+DQV+R+ +ML +E+GTASNIKSRVNR SVLGAITS Q RLKLYNKVPPNGLV+Y GTI+TD+GKEKKV IDFEPF+ IN SLYLCDNKFHT+AL  LL  D+KFGFI+MDGNG LFGTL GNTREVLHKF+VDLP+
Sbjct:   36 RGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKSRVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAINTSLYLCDNKFHTEALQGLLADDNKFGFIIMDGNGCLFGTLQGNTREVLHKFTVDLPK 186          

HSP 2 Score: 31.5722 bits (70), Expect = 4.622e-69
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSA+RFA
Sbjct:  186 KKHGRGGQSAVRFA 199          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.074e-66
Identity = 111/151 (73.51%), Postives = 135/151 (89.40%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            RGNGTSMISL++ P+D++SR++KML DE+GTASNIKSRVNR SVL AITS QQRLKLYN+ P NGLV+Y GT++T+DGKEKKV IDFEPF+PIN SLYLCDNKFH DAL ELLE+DDKFGFI++DGNG L+G + G++REVL +F+VDLP+
Sbjct:   24 RGNGTSMISLVIKPKDEISRISKMLADEYGTASNIKSRVNRLSVLSAITSTQQRLKLYNRTPQNGLVVYCGTLITEDGKEKKVNIDFEPFKPINTSLYLCDNKFHVDALKELLETDDKFGFIIVDGNGALYGVVQGSSREVLLRFNVDLPK 174          

HSP 2 Score: 32.7278 bits (73), Expect = 2.074e-66
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  174 KKHGRGGQSALRFA 187          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.019e-65
Identity = 120/175 (68.57%), Postives = 135/175 (77.14%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            D Q  DK                 RGNGTSMISLI+ P DQ+++V KML +E+GTASNIKSRVNR SVLGAITSAQQRLKLY KVP NGLV+Y GT+VTD+GKEK V ID EPF+PIN SLYLCDNKFHT  L ELLESD+KFGFIV+DGNG LFG L G+TR VLHK +VDLP+
Sbjct:    6 DQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGTASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPK 180          

HSP 2 Score: 32.7278 bits (73), Expect = 1.019e-65
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  180 KKHGRGGQSALRFA 193          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 3.844e-65
Identity = 115/172 (66.86%), Postives = 135/172 (78.49%), Query Frame = 2
Query:  146 ETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            E +KN                RGNGTSMISL++PP+  +    KML DE+GTASNIKSRVNR SVL AITS QQ+LKLYN +P NGLVLY G I+T+DGKEKKVT D EP++PIN SLYLCDNKFHT+ L+ELL++DDKFGFIVMDG GTLFG++SGNTR VLHKF+VDLP+
Sbjct:    4 EVEKNIEIWKVKKLVQSLEKARGNGTSMISLVIPPKGLIPLYQKMLTDEYGTASNIKSRVNRLSVLSAITSTQQKLKLYNTLPKNGLVLYCGDIITEDGKEKKVTFDIEPYKPINTSLYLCDNKFHTEVLSELLQADDKFGFIVMDGQGTLFGSVSGNTRTVLHKFTVDLPK 175          

HSP 2 Score: 32.7278 bits (73), Expect = 3.844e-65
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  175 KKHGRGGQSALRFA 188          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.898e-59
Identity = 102/150 (68.00%), Postives = 127/150 (84.67%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            GNGTSMI+LI+PP +Q+SR + ML +E+GTASNIKSRVNR SVL AITS ++RLKLYNKVP NGLV+Y G ++ +  K +K+ IDFEPF+PIN S YLCDNKFHT+AL ELLESD +FGFIVMDG+ TL+G +SG+ REVL +F+VDLP+
Sbjct:   26 GNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPK 175          

HSP 2 Score: 32.7278 bits (73), Expect = 2.898e-59
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  175 KKHGRGGQSALRFA 188          
The following BLAST results are available for this feature:
BLAST of FC931478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_MOUSE4.641e-7273.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU4.641e-7273.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN4.641e-7273.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN4.641e-7273.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN4.642e-7272.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL4.622e-6979.47Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO2.074e-6673.51Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI1.019e-6568.57Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST3.844e-6566.86Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO2.898e-5968.00Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34105E09EF PostHarvP1 Citrus clementina cDNA clone C34105E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931478 ID=FC931478; Name=FC931478; organism=Citrus clementina; type=EST; length=700bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTCAGTGTTG
ACCTTCCAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCGGTTTGCCC
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