FC931486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_RHOFD (50S ribosomal protein L2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 66/206 (32.04%), Postives = 100/206 (48.54%), Query Frame = 3 Query: 93 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710 I + KG G H HH +R +DF + V I +DP R A +A V + ++ IA G+ G + G +A + VGN LP+R+IP G++V +E +G + R++G A +++ + +V++ SG + I CRA +GQVA + + L KAG K P VRGV MNPV+HP Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFLRTKDGIPAKVERIEYDPNRSAHIALVCYADG-----ERRYIIAPRGLEVGASIMSGAEAPIRVGNTLPIRNIPVGSIVHCIELQIGKGAQIVRSAGTSATLLAR--EGIYAQVRMRSGEVRKIHIECRATLGQVANEEHSLRRLGKAGAKRWK-----GIRPTVRGVVMNPVDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_PETMO (50S ribosomal protein L2 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 66/209 (31.58%), Postives = 104/209 (49.76%), Query Frame = 3 Query: 84 GRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710 GRV R G H RK +R +DF + VA I +DP R A +A + + +K ++ +G++ G+ V G KA + VGN LP+ +IP G +V N+E G G +A+++G YA +++ + +K+PSG + + C A IG V + + KAG ++ +R PKVRG+ NPV+HP Sbjct: 47 GRVTMRHRGGG--------HKRK----YRIIDFKRDKINIPAKVASIEYDPNRSARIALLVYADG-----EKRYILSPKGLHVGETVMSGAKAEIKVGNSLPLENIPLGTLVHNIEFEPGRGGKIAKSAGTYAQLMA--KEGKYALLKMPSGELRRVRLSCMATIGVVGNEEHSNEVYGKAGKT--RWLGRR---PKVRGMVQNPVDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_NITOC (50S ribosomal protein L2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 62/182 (34.07%), Postives = 96/182 (52.75%), Query Frame = 3 Query: 165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710 +R +DF + G V I +DP R A +A + + +K IA + + G + G++A + GN LP+R+IP G +V +E G +AR++G +++ + D ++L SG + +P CRA IG+V G + L KAG ++R KR P VRGVAMNPV+HP Sbjct: 62 YRIIDFRRDKIDVLGRVKRIEYDPNRSAHIALINYSDG-----EKRYIIAPKAVKVGDIITSGREAPIRDGNCLPLRNIPVGTLVHCIELKPGKGAQIARSAGSSCQLVAR--EGDHAMLRLRSGEIRKVPLECRATIGEVGNDGHGLRSLGKAGAM--RWRGKR---PTVRGVAMNPVDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 68/226 (30.09%), Postives = 108/226 (47.79%), Query Frame = 3 Query: 36 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 710 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HP Sbjct: 30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 68/226 (30.09%), Postives = 108/226 (47.79%), Query Frame = 3 Query: 36 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 710 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HP Sbjct: 30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_MYCMO (50S ribosomal protein L2 OS=Mycoplasma mobile GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 61/219 (27.85%), Postives = 107/219 (48.86%), Query Frame = 3 Query: 69 PSKEMGRVIR--AQRKGAGSVFKSHTHHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710 P+K + +++ A R +G + H KG + +R +DF + ++ +V I +DP R A ++ + ++ F K + +G+ + G+ + +GN LP+++IPEG + N+E ++AR++G A I+ + + ++L SG + I + CRA IG V + + KAG HK P VRG AMNP +HP Sbjct: 30 PTKSLMTILKKKAGRNNSGQITTRH----KGSGEKRKYRLVDFKRQKDNIEAIVKTIEYDPNRSANISLIVYKDGF-----KSYILYPKGLKVNDVIVSGEDVDIKIGNTLPLKNIPEGTFIHNIEMQPKGGAIIARSAGSSAQILGKDDNGKYVVLRLKSGETRRILAECRATIGVVGNEEHSLVNVGKAGRNRHK-----GIRPTVRGSAMNPNDHP 234
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_GEOSM (50S ribosomal protein L2 OS=Geobacter sp. (strain M21) GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 62/187 (33.16%), Postives = 95/187 (50.80%), Query Frame = 3 Query: 162 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710 ++R +DF + VA I +DP R A +A + + +K +A + G V ++A + GN LP+R IP G ++ N+E +G LAR++G +A +++ + +VKLPSG ++I C+A IGQV + KAG R+ W P VRGVAMNPV+HP Sbjct: 61 KYRIIDFRRDKTEIPAKVATIEYDPCRSARIALLNYADG-----EKRYILAPLSLKVGDTVISSEQADIKPGNALPIRCIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEGKYGQVKLPSGEVRMILMDCKATIGQVGNVDHENVSIGKAG---------RSRWLGVRPHVRGVAMNPVDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BACSU (50S ribosomal protein L2 OS=Bacillus subtilis GN=rplB PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 68/209 (32.54%), Postives = 102/209 (48.80%), Query Frame = 3 Query: 102 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710 ++ G + K H+ G Q+R +DF + G VA + +DP R A +A + + +K +A +G+ G + G +A + VGN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +HP Sbjct: 39 KKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQV---GNEQHELINIGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_ACIC5 (50S ribosomal protein L2 OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rplB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 64/195 (32.82%), Postives = 95/195 (48.72%), Query Frame = 3 Query: 141 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710 HH G + R +DF + G VA I +DP R + +A +++ +K + G+ GQ + G +A ++VGN LP+++IP G V NVE G + R++G A +++ + D +KLPSG + + C A IGQV + KAG RN W P RGV MNPV+HP Sbjct: 53 HHGGGHKKKLRLIDFKRDKFGVPGRVATIEYDPNRSSRIALISYADG-----EKRYILQPVGLKVGQTIMSGPEADILVGNALPLKNIPAGTTVHNVELRPGKGAQMVRSAGASAQLVA--KEGDYALLKLPSGETRRVLINCMATIGQVGNTDHENVSIGKAG---------RNRWKGIRPTNRGVTMNPVDHP 231
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RK2_NICDE (50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19 Identity = 64/207 (30.92%), Postives = 102/207 (49.28%), Query Frame = 3 Query: 90 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710 +I A+ +G G H++ +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG + I C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+HP Sbjct: 46 IITARHRGGG--------HKR---LYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRSISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 229 The following BLAST results are available for this feature:
BLAST of FC931486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931486 ID=FC931486; Name=FC931486; organism=Citrus clementina; type=EST; length=711bpback to top |